Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 0.0e+00 1590.1 791 100.0
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 9.7e-219 764.2 787 51.3
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 8.0e-165 585.1 755 44.6
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 9.0e-140 501.9 741 39.5
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.4e-138 495.7 543 49.5
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.6e-128 464.5 608 42.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.5e-122 442.6 779 35.9
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.1e-120 437.6 749 36.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.0e-120 436.0 778 35.1
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.8e-119 434.5 812 34.7
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.6e-115 420.6 772 33.7
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.2e-114 417.5 823 33.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.5e-113 414.1 768 35.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.2e-113 413.7 765 34.2
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.2e-113 413.7 688 37.9
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.6e-112 411.4 816 34.9
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.5e-112 410.2 780 35.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 6.1e-112 409.5 769 34.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 7.9e-112 409.1 770 34.7
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.8e-111 407.9 761 34.8
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.9e-111 406.8 755 35.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 5.1e-111 406.4 768 33.9
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 6.7e-111 406.0 827 34.0
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 8.7e-111 405.6 767 34.3
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.1e-110 405.2 615 38.4
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.9e-110 404.4 765 34.4
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.3e-110 403.7 801 33.5
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.3e-110 403.7 756 34.3
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 3.3e-110 403.7 775 32.9
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 5.7e-110 402.9 781 34.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-109 401.7 768 34.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.6e-109 401.4 761 35.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.7e-109 400.2 767 34.2
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.8e-109 399.8 756 34.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.3e-109 399.4 809 32.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.3e-109 399.4 760 34.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.1e-108 398.7 622 38.4
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.1e-108 398.7 763 35.8
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.4e-108 398.3 810 33.1
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.4e-108 398.3 759 34.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.8e-108 397.9 769 34.6
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.1e-108 397.1 804 33.5
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 3.1e-108 397.1 758 35.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.1e-108 397.1 808 32.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 3.1e-108 397.1 767 35.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 4.1e-108 396.7 782 34.8
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 5.3e-108 396.4 807 33.5
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.3e-108 396.4 649 37.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 5.3e-108 396.4 799 33.0
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.4e-107 393.7 785 33.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.4e-107 393.7 769 34.9
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.4e-107 393.7 759 33.9
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.5e-107 393.3 793 33.7
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 4.5e-107 393.3 765 34.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 7.7e-107 392.5 760 34.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.0e-106 392.1 772 33.7
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.0e-106 392.1 765 34.5
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 2.2e-106 391.0 757 33.8
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.8e-106 390.2 823 33.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 3.8e-106 390.2 755 34.6
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 5.0e-106 389.8 757 33.8
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 6.5e-106 389.4 763 34.9
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 8.5e-106 389.0 657 35.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.4e-105 388.3 765 33.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.9e-105 387.9 775 33.4
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.9e-105 387.9 819 31.5
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 2.5e-105 387.5 693 35.2
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 4.2e-105 386.7 697 35.9
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.2e-105 386.7 758 34.7
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.2e-105 386.7 764 34.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 7.2e-105 386.0 815 32.3
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 7.2e-105 386.0 758 34.0
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.7e-104 384.0 766 34.2
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.7e-104 384.0 765 34.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.6e-104 383.6 774 32.8
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 4.6e-104 383.3 804 33.5
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 4.6e-104 383.3 654 35.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 7.9e-104 382.5 810 33.3
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 7.9e-104 382.5 769 32.6
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.9e-104 382.5 759 34.5
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.0e-103 382.1 769 32.4
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.4e-103 381.7 784 34.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 3.0e-103 380.6 667 34.9
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.0e-103 380.6 768 32.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 6.7e-103 379.4 768 33.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.7e-103 379.4 734 33.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.5e-102 378.3 763 32.9
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 9.7e-102 375.6 759 33.5
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.8e-101 374.0 709 34.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 4.8e-101 373.2 730 34.1
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.8e-100 371.3 657 35.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 6.9e-100 369.4 664 34.9
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 4.5e-99 366.7 793 31.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.9e-98 364.0 813 30.8
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 8.5e-98 362.5 620 36.1
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 3.6e-96 357.1 601 35.9
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 3.0e-95 354.0 797 32.4
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 3.7e-93 347.1 758 32.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 7.0e-92 342.8 565 35.8
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.9e-89 334.7 695 33.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.4e-89 332.4 734 31.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 3.9e-87 327.0 715 33.0
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.3e-86 323.9 579 35.4
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 5.7e-86 323.2 484 38.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.2e-80 305.4 618 33.3
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.2e-77 294.7 415 41.0
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.6e-70 271.2 480 34.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 5.9e-67 260.0 613 32.5
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 4.4e-62 243.8 586 31.1
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 9.5e-57 226.1 585 31.5
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.9e-50 204.1 334 37.4
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 6.0e-43 180.3 337 33.5
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.6e-40 171.0 407 31.2
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.7e-37 162.2 222 42.8
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 6.0e-27 127.1 176 39.8
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-25 122.9 179 38.0
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 3.6e-24 117.9 420 27.1
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.4e-22 111.3 143 38.5
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.3e-21 109.4 392 28.6
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.1e-15 88.2 129 41.9
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.4e-12 78.6 192 30.2
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.9e-10 71.2 68 47.1
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 5.6e-09 67.4 129 32.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.8e-07 62.4 185 26.5
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 9.0e-07 60.1 164 29.3


User provided reference genes

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