Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 2.6e-206 721.8 371 100.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 6.8e-98 361.7 362 56.9
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 3.6e-75 286.2 275 55.6
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 4.7e-75 285.8 320 49.1
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.7e-72 277.3 314 51.0
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.9e-72 276.6 349 47.6
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 5.4e-71 272.3 317 48.9
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 9.2e-71 271.6 336 46.7
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 1.6e-70 270.8 313 49.8
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 2.7e-70 270.0 326 47.9
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 3.5e-70 269.6 322 49.7
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 6.0e-70 268.9 359 45.4
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.0e-69 268.1 323 50.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.3e-69 267.7 312 47.8
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 1.3e-69 267.7 315 48.6
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.3e-69 267.7 355 46.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 1.7e-69 267.3 322 50.0
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 3.0e-69 266.5 313 47.6
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-69 266.2 322 46.9
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 8.6e-69 265.0 320 47.8
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 8.6e-69 265.0 319 49.5
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 8.6e-69 265.0 318 46.9
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.1e-68 264.6 333 47.1
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.1e-68 264.6 326 47.5
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.5e-68 264.2 333 47.1
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 1.5e-68 264.2 362 44.2
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 1.9e-68 263.8 334 47.9
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.9e-68 263.8 336 45.5
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 1.9e-68 263.8 346 46.8
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 2.5e-68 263.5 312 48.4
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 2.5e-68 263.5 317 47.9
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 3.3e-68 263.1 320 47.2
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 3.3e-68 263.1 322 48.8
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 4.3e-68 262.7 312 48.7
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 4.3e-68 262.7 320 47.8
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 4.3e-68 262.7 310 48.4
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 4.3e-68 262.7 314 50.0
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 7.3e-68 261.9 334 46.7
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.6e-67 260.8 312 49.0
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.1e-67 260.4 334 46.7
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 2.1e-67 260.4 310 47.4
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.8e-67 260.0 334 46.7
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 2.8e-67 260.0 318 47.8
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 3.6e-67 259.6 311 47.9
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 3.6e-67 259.6 320 47.8
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 3.6e-67 259.6 336 45.2
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 4.7e-67 259.2 310 48.1
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 6.2e-67 258.8 333 46.5
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 6.2e-67 258.8 333 46.5
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.1e-66 258.1 311 48.6
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.4e-66 257.7 327 46.8
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.4e-66 257.7 333 46.8
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.8e-66 257.3 313 49.8
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 2.4e-66 256.9 333 46.8
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 3.1e-66 256.5 300 48.3
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 6.9e-66 255.4 314 48.7
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 8.9e-66 255.0 318 48.7
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 8.9e-66 255.0 320 46.9
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.2e-65 254.6 300 48.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.5e-65 254.2 331 45.9
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 3.4e-65 253.1 331 44.7
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 4.4e-65 252.7 321 46.1
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.7e-64 250.8 331 47.4
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.9e-64 250.0 312 48.7
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 3.8e-64 249.6 334 46.1
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 3.8e-64 249.6 335 45.1
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 6.4e-64 248.8 314 48.4
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 6.4e-64 248.8 312 48.7
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 8.4e-64 248.4 341 44.6
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 1.1e-63 248.1 346 42.8
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.1e-63 248.1 321 47.0
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.4e-63 247.7 308 49.0
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 5.4e-63 245.7 339 43.1
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 4.6e-62 242.7 314 45.5
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 7.8e-62 241.9 316 44.9
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.0e-61 241.5 311 46.6
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.9e-60 237.3 350 44.0
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.9e-60 237.3 321 46.1
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.9e-60 237.3 336 44.6
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 9.6e-60 235.0 238 54.2
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.1e-59 233.8 313 46.3
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 1.1e-58 231.5 283 47.7
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.8e-58 230.7 283 47.7
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.1e-58 229.9 283 48.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.0e-58 229.6 310 45.2
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.2e-54 218.0 272 47.8
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 3.5e-54 216.5 230 52.2
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 6.0e-54 215.7 241 49.4
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.0e-54 215.7 334 41.9
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 8.7e-53 211.8 276 46.0
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 2.5e-52 210.3 286 45.1
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 7.4e-52 208.8 301 42.5
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 7.4e-52 208.8 276 47.5
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 4.8e-51 206.1 215 53.0
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 4.8e-51 206.1 281 47.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 1.1e-50 204.9 333 39.0
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 7.6e-49 198.7 355 37.7
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 6.0e-46 189.1 269 44.6
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 7.9e-46 188.7 273 45.4
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.3e-45 188.0 179 53.1
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.3e-45 188.0 197 53.3
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 3.0e-45 186.8 426 34.5
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 1.5e-44 184.5 276 43.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.3e-40 171.4 245 44.9
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.1e-38 164.1 245 44.1
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.2e-33 148.3 244 40.2
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.3e-32 144.8 246 39.0
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 6.3e-27 125.9 198 42.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 4.2e-23 113.2 96 58.3
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.4e-21 108.2 278 29.9
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 3.0e-21 107.1 181 40.9
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 4.8e-19 99.8 268 30.2
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.7e-16 91.3 75 57.3
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 1.2e-14 85.1 86 52.3
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 6.1e-14 82.8 285 29.1
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.8e-13 81.3 86 50.0
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.7e-11 74.7 53 62.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.1e-07 62.0 146 34.2
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.1e-07 62.0 146 34.2
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 1.2e-06 58.5 55 54.5
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 1.2e-06 58.5 55 54.5
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 6.1e-06 56.2 184 26.6
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 8.0e-06 55.8 174 25.9


User provided reference genes

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