Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 8.1e-97 357.1 180 100.0
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.3e-81 306.6 180 85.6
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 1.1e-32 144.1 167 45.5
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 2.6e-18 96.3 171 32.7
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 8.3e-17 91.3 118 39.0
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.1e-16 90.9 170 32.4
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.8e-16 90.1 180 31.1
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.1e-16 89.0 170 31.8
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 9.2e-16 87.8 175 33.1
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.6e-15 87.0 163 31.9
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.7e-15 86.3 138 34.1
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.7e-15 86.3 126 35.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 5.9e-15 85.1 171 27.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 5.9e-15 85.1 168 29.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 5.9e-15 85.1 111 35.1
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 7.8e-15 84.7 111 36.0
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 3.0e-14 82.8 169 30.2
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 3.9e-14 82.4 153 30.7
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.9e-14 82.4 127 31.5
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 8.6e-14 81.3 127 31.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 8.6e-14 81.3 127 31.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.1e-13 80.9 111 32.4
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.5e-13 80.5 156 30.1
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.5e-13 80.5 178 25.8
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.5e-13 80.5 119 33.6
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.5e-13 79.7 154 31.2
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 2.5e-13 79.7 127 31.5
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 2.5e-13 79.7 174 28.2
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 3.3e-13 79.3 119 35.3
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.3e-13 79.3 111 35.1
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 4.3e-13 79.0 178 25.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 4.3e-13 79.0 104 37.5
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 9.5e-13 77.8 169 27.8
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 9.5e-13 77.8 112 33.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 9.5e-13 77.8 111 33.3
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.2e-12 77.4 152 28.3
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 2.8e-12 76.3 175 27.4
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 3.6e-12 75.9 136 30.1
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.6e-12 75.9 100 36.0
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 3.6e-12 75.9 169 27.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 4.7e-12 75.5 173 25.4
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 6.2e-12 75.1 122 30.3
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 8.0e-12 74.7 150 30.0
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 8.0e-12 74.7 170 24.1
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 8.0e-12 74.7 169 23.1
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 8.0e-12 74.7 158 27.2
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 8.0e-12 74.7 145 30.3
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.1e-11 74.3 97 36.1
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.4e-11 73.9 166 29.5
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 1.8e-11 73.6 103 33.0
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.3e-11 73.2 104 33.7
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.3e-11 73.2 94 36.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 5.2e-11 72.0 165 27.9
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 6.8e-11 71.6 170 26.5
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 6.8e-11 71.6 173 25.4
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 6.8e-11 71.6 172 29.1
PRCOL_00005442 Prasinoderma coloniale HOM05D004617 ORTHO05D005531 6.8e-11 71.6 95 41.1
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 6.8e-11 71.6 100 34.0
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 8.9e-11 71.2 95 33.7
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-10 70.9 91 35.2
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.2e-10 70.9 99 34.3
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.5e-10 70.5 182 22.0
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.5e-10 70.5 173 24.3
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.5e-10 70.5 100 34.0
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 2.0e-10 70.1 88 37.5
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.0e-10 70.1 88 37.5
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.0e-10 70.1 154 24.7
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.0e-10 70.1 169 23.1
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.0e-10 70.1 87 39.1
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 2.0e-10 70.1 169 28.4
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.0e-10 70.1 184 26.6
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 2.6e-10 69.7 169 26.6
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 2.6e-10 69.7 86 38.4
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.6e-10 69.7 121 28.9
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.4e-10 69.3 175 26.3
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 3.4e-10 69.3 108 32.4
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.4e-10 69.3 167 26.9
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.4e-10 69.3 165 32.1
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 4.4e-10 68.9 165 27.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 4.4e-10 68.9 124 30.6
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.4e-10 68.9 113 35.4
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 4.4e-10 68.9 170 27.1
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 5.8e-10 68.6 169 24.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 5.8e-10 68.6 169 26.0
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.8e-10 68.6 105 31.4
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 5.8e-10 68.6 168 24.4
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 5.8e-10 68.6 86 36.0
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 9.8e-10 67.8 165 27.3
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 9.8e-10 67.8 88 36.4
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 9.8e-10 67.8 114 31.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 9.8e-10 67.8 170 27.1
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.8e-10 67.8 89 33.7
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 9.8e-10 67.8 105 32.4
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 9.8e-10 67.8 99 34.3
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 1.3e-09 67.4 149 26.2
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.3e-09 67.4 170 27.6
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-09 67.0 149 30.2
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.7e-09 67.0 87 36.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-09 66.6 88 35.2
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.2e-09 66.6 167 24.6
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.2e-09 66.6 99 31.3
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.2e-09 66.6 99 31.3
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.2e-09 66.6 91 37.4
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.2e-09 66.6 87 35.6
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.2e-09 66.6 115 30.4
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.2e-09 66.6 101 31.7
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.2e-09 66.6 101 31.7
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.2e-09 66.6 91 37.4
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.9e-09 66.2 163 31.3
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.9e-09 66.2 169 22.5
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.9e-09 66.2 169 22.5
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.9e-09 66.2 153 29.4
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 4.9e-09 65.5 138 28.3
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 6.4e-09 65.1 99 32.3
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.4e-09 65.1 167 22.8
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 8.3e-09 64.7 149 25.5
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 8.3e-09 64.7 101 30.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.1e-08 64.3 169 24.3
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.1e-08 64.3 168 26.2
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.1e-08 64.3 127 28.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.4e-08 63.9 91 33.0
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.4e-08 63.9 179 23.5
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.4e-08 63.2 98 28.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.4e-08 63.2 146 26.7
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 3.2e-08 62.8 201 22.4
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.1e-08 62.4 179 24.6
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 7.0e-08 61.6 90 36.7
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 7.0e-08 61.6 90 36.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.2e-08 61.2 87 31.0
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.0e-07 60.1 99 28.3
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.7e-07 59.7 134 27.6
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 4.6e-07 58.9 164 26.8


User provided reference genes

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