Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 2.2e-90 335.5 155 100.0
Pp3c17_11500 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.5e-16 89.0 145 31.7
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 7.4e-14 81.3 127 33.9
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 2.2e-13 79.7 126 31.7
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.7e-13 79.0 122 37.7
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.7e-13 79.0 122 37.7
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.1e-12 77.4 137 31.4
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 1.1e-12 77.4 122 32.8
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 1.4e-12 77.0 125 30.4
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 1.8e-12 76.6 119 32.8
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 1.8e-12 76.6 153 32.7
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 2.4e-12 76.3 125 27.2
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 2.4e-12 76.3 125 32.0
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 3.1e-12 75.9 126 33.3
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 3.1e-12 75.9 125 28.0
SEGI_30515 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 6.9e-12 74.7 129 33.3
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 1.2e-11 73.9 125 35.2
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 2.0e-11 73.2 120 31.7
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 2.0e-11 73.2 140 29.3
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 2.0e-11 73.2 126 31.0
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 4.5e-11 72.0 141 27.7
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 4.5e-11 72.0 118 30.5
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 5.9e-11 71.6 128 28.9
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 7.7e-11 71.2 120 30.8
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 7.7e-11 71.2 118 28.8
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 7.7e-11 71.2 118 30.5
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 1.0e-10 70.9 120 30.8
Mapoly0151s0036 Marchantia polymorpha HOM05D000322 ORTHO05D000186 1.0e-10 70.9 135 27.4
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 1.0e-10 70.9 123 30.9
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 2.9e-10 69.3 125 28.8
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 3.8e-10 68.9 119 29.4
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 3.8e-10 68.9 151 26.5
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 6.5e-10 68.2 137 32.1
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 6.5e-10 68.2 129 29.5
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 6.5e-10 68.2 128 30.5
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 6.5e-10 68.2 127 28.3
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 8.5e-10 67.8 137 32.1
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 1.1e-09 67.4 124 28.2
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 1.4e-09 67.0 109 33.0
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 1.9e-09 66.6 124 28.2
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.9e-09 66.6 130 28.5
Pp3c10_2750 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.9e-09 66.6 130 31.5
Pp3c10_2760 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.9e-09 66.6 130 31.5
DCAR_002490 Daucus carota HOM05D000322 ORTHO05D000186 2.5e-09 66.2 131 28.2
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 2.5e-09 66.2 126 29.4
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 2.5e-09 66.2 126 29.4
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 7.2e-09 64.7 118 28.0
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 7.2e-09 64.7 124 26.6
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-08 63.9 133 28.6
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.6e-08 63.5 123 30.9
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 2.7e-08 62.8 118 28.0
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 3.6e-08 62.4 112 32.1
Peaxi162Scf00421g00328 Petunia axillaris HOM05D000197 ORTHO05D000114 3.6e-08 62.4 126 30.2
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.6e-08 62.0 144 29.9
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.6e-08 62.0 144 29.9
Rhsim04G0231400 Rhododendron simsii HOM05D000322 ORTHO05D000186 4.6e-08 62.0 160 25.6
vmacro08084 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 4.6e-08 62.0 160 25.6
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 4.6e-08 62.0 110 27.3
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 6.1e-08 61.6 135 28.1
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.1e-08 61.6 133 28.6
vmacro08083 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 6.1e-08 61.6 160 26.2
CiPaw.01G143200 Carya illinoinensis HOM05D000322 ORTHO05D000186 7.9e-08 61.2 140 29.3
DCAR_023317 Daucus carota HOM05D000322 ORTHO05D000186 7.9e-08 61.2 151 26.5
vmacro08089 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 7.9e-08 61.2 133 28.6
HanXRQChr12g0372961 Helianthus annuus HOM05D000322 ORTHO05D000186 1.0e-07 60.8 145 26.2
Lj6A683T52 Lonicera japonica HOM05D000322 ORTHO05D000186 1.0e-07 60.8 163 25.2
Haze_01110 Corylus avellana HOM05D000322 ORTHO05D000186 1.4e-07 60.5 134 29.1
Haze_01112 Corylus avellana HOM05D000322 ORTHO05D000186 1.4e-07 60.5 134 29.1
Eucgr.A00142 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.8e-07 60.1 161 27.3
HanXRQChr12g0372951 Helianthus annuus HOM05D000322 ORTHO05D000186 1.8e-07 60.1 145 25.5
Rhsim04G0231300 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.8e-07 60.1 160 25.0
Zm00001eb072230 Zea mays HOM05D001593 ORTHO05D002007 1.8e-07 60.1 131 32.1
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 3.0e-07 59.3 128 27.3
QL06p011089 Quercus lobata HOM05D000322 ORTHO05D000186 3.0e-07 59.3 161 28.0
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 3.0e-07 59.3 119 30.3
SEGI_36997 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 3.0e-07 59.3 144 27.1
unitig_32.g11860 Utricularia gibba HOM05D000322 ORTHO05D000186 3.0e-07 59.3 159 27.0
HanXRQChr11g0339961 Helianthus annuus HOM05D000322 ORTHO05D000186 3.9e-07 58.9 160 24.4
HanXRQChr11g0339971 Helianthus annuus HOM05D000322 ORTHO05D000186 3.9e-07 58.9 160 24.4
HanXRQChr11g0339981 Helianthus annuus HOM05D000322 ORTHO05D000186 3.9e-07 58.9 160 24.4
CANSAT78G0028 Cannabis sativa HOM05D000322 ORTHO05D000186 5.1e-07 58.5 134 26.9
HanXRQChr11g0339951 Helianthus annuus HOM05D000322 ORTHO05D000186 6.7e-07 58.2 160 24.4
HanXRQChr11g0339991 Helianthus annuus HOM05D000322 ORTHO05D000186 6.7e-07 58.2 160 24.4
MD13G1161400 Malus domestica HOM05D000322 ORTHO05D000186 6.7e-07 58.2 155 25.8
Rhsim04G0230000 Rhododendron simsii HOM05D000322 ORTHO05D000186 6.7e-07 58.2 132 27.3
Eucgr.A00155 Eucalyptus grandis HOM05D000322 ORTHO05D000186 8.8e-07 57.8 134 28.4
Rhsim04G0230100 Rhododendron simsii HOM05D000322 ORTHO05D000186 8.8e-07 57.8 132 26.5
COL.COLO4_13147 Corchorus olitorius HOM05D000197 ORTHO05D000114 1.1e-06 57.4 148 26.4
PGR004G2618 Punica granatum HOM05D000322 ORTHO05D000186 1.1e-06 57.4 135 30.4
SalBow2G0226 Salvia bowleyana HOM05D000322 ORTHO05D000186 1.1e-06 57.4 135 25.9
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 1.1e-06 57.4 131 25.2
Carub.0002s1760 Capsella rubella HOM05D000197 ORTHO05D000114 1.5e-06 57.0 112 25.0
QL06p011020 Quercus lobata HOM05D000322 ORTHO05D000186 1.5e-06 57.0 136 30.1
CiPaw.01G143300 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.0e-06 56.6 134 29.1
Cc03_g10090 Coffea canephora HOM05D000322 ORTHO05D000186 2.0e-06 56.6 127 29.9
MD16G1160700 Malus domestica HOM05D000322 ORTHO05D000186 2.0e-06 56.6 154 24.7
CARHR064110 Cardamine hirsuta HOM05D000197 ORTHO05D000114 2.5e-06 56.2 104 26.0
CiPaw.02G078100 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.5e-06 56.2 134 29.1
Eucgr.A00126 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.5e-06 56.2 101 33.7
PGR004G2316 Punica granatum HOM05D000322 ORTHO05D000186 2.5e-06 56.2 156 26.9
CARHR286270 Cardamine hirsuta HOM05D000197 ORTHO05D000114 3.3e-06 55.8 104 26.9
PGR031G1022 Punica granatum HOM05D000322 ORTHO05D000186 3.3e-06 55.8 114 29.8
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 4.3e-06 55.5 102 34.3
Medtr4g120950 Medicago truncatula HOM05D000322 ORTHO05D000186 5.7e-06 55.1 105 29.5
VMungo1309G0974 Vigna mungo HOM05D000322 ORTHO05D000186 5.7e-06 55.1 100 33.0
Haze_01108 Corylus avellana HOM05D000322 ORTHO05D000186 9.7e-06 54.3 119 28.6


User provided reference genes

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