Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 0.0e+00 1140.9 565 100.0
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 4.6e-29 133.7 197 43.7
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.3e-28 131.3 252 37.3
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.0e-28 131.0 236 36.9
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.5e-27 128.6 256 32.8
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.5e-27 127.9 380 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 3.3e-27 127.5 181 41.4
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 5.6e-27 126.7 516 29.3
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 5.6e-27 126.7 196 39.3
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 7.3e-27 126.3 205 36.6
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.2e-26 125.6 343 30.0
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.1e-26 124.8 189 39.7
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.8e-26 124.4 412 29.1
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.8e-26 124.4 200 39.5
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 4.7e-26 123.6 439 29.2
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.7e-26 123.6 224 35.3
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 4.7e-26 123.6 263 33.5
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 6.2e-26 123.2 334 32.3
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 8.1e-26 122.9 402 29.9
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 8.1e-26 122.9 337 30.9
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 1.8e-25 121.7 264 33.3
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 1.8e-25 121.7 417 30.0
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 1.8e-25 121.7 395 30.1
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 2.4e-25 121.3 356 29.8
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 3.1e-25 120.9 342 29.8
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.1e-25 120.9 188 37.8
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 3.1e-25 120.9 311 30.5
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.0e-25 120.6 202 37.1
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 4.0e-25 120.6 412 29.1
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 5.2e-25 120.2 389 31.9
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 5.2e-25 120.2 537 28.9
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 6.8e-25 119.8 389 29.3
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 8.9e-25 119.4 334 30.5
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.2e-24 119.0 191 37.7
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.0e-24 118.2 311 32.5
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.6e-24 117.9 225 35.6
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.4e-24 117.5 373 29.8
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.4e-24 117.5 393 30.0
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.4e-24 117.5 401 29.2
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.4e-24 117.5 328 30.2
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 4.4e-24 117.1 331 30.8
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.8e-24 116.7 216 36.1
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 7.6e-24 116.3 393 28.5
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 7.6e-24 116.3 366 29.5
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 7.6e-24 116.3 344 30.5
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 7.6e-24 116.3 410 28.3
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 9.9e-24 115.9 400 28.2
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 9.9e-24 115.9 366 29.5
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 9.9e-24 115.9 388 29.4
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 9.9e-24 115.9 348 29.9
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.3e-23 115.5 364 30.2
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.3e-23 115.5 342 30.1
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.3e-23 115.5 344 32.3
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.3e-23 115.5 357 31.1
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.3e-23 115.5 196 36.2
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.7e-23 115.2 255 33.7
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 2.2e-23 114.8 372 29.6
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 2.9e-23 114.4 344 30.2
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 2.9e-23 114.4 387 30.2
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 3.8e-23 114.0 325 32.0
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.8e-23 114.0 348 29.6
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 4.9e-23 113.6 415 29.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 6.4e-23 113.2 390 30.0
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 8.4e-23 112.8 433 28.6
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.4e-23 112.8 357 28.3
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.9e-22 111.7 395 29.1
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.9e-22 111.7 395 29.1
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 3.2e-22 110.9 466 28.1
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 3.2e-22 110.9 450 28.9
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.2e-22 110.9 319 34.2
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 4.2e-22 110.5 393 28.8
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 4.2e-22 110.5 345 29.9
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 5.4e-22 110.2 478 27.2
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 5.4e-22 110.2 320 30.0
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 7.1e-22 109.8 391 28.6
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 7.1e-22 109.8 359 29.8
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 9.2e-22 109.4 328 30.8
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.6e-21 108.6 392 27.3
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.1e-21 108.2 384 28.6
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 2.1e-21 108.2 257 31.9
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 2.7e-21 107.8 400 28.8
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.7e-21 107.8 415 27.7
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 3.5e-21 107.5 257 31.9
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 3.5e-21 107.5 257 31.9
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.5e-21 107.5 175 40.0
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-21 107.1 396 27.8
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 4.6e-21 107.1 382 27.7
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 6.0e-21 106.7 420 29.8
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 6.0e-21 106.7 478 28.7
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 7.8e-21 106.3 179 36.3
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.0e-20 105.9 389 27.5
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.0e-20 105.9 369 28.5
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.0e-20 105.9 378 29.1
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.3e-20 105.5 389 27.2
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.3e-20 105.5 403 27.3
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.7e-20 105.1 403 28.8
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.7e-20 105.1 388 28.6
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.7e-20 105.1 478 27.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.3e-20 104.8 358 30.2
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.3e-20 104.8 332 29.2
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 3.0e-20 104.4 442 26.7
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.0e-20 104.4 416 27.9
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 3.0e-20 104.4 424 27.1
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 3.0e-20 104.4 393 28.2
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 3.9e-20 104.0 394 26.9
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 3.9e-20 104.0 394 26.9
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 5.1e-20 103.6 483 26.9
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 6.6e-20 103.2 420 27.4
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 8.7e-20 102.8 463 29.2
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 8.7e-20 102.8 403 28.0
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 8.7e-20 102.8 306 31.0
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 8.7e-20 102.8 399 28.1
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.5e-19 101.3 313 30.0
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 2.5e-19 101.3 393 28.2
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 4.3e-19 100.5 357 28.0
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 4.3e-19 100.5 366 30.1
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 5.6e-19 100.1 457 26.7
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 7.3e-19 99.8 435 26.7
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 7.3e-19 99.8 478 25.7
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 9.6e-19 99.4 355 27.9
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.1e-18 98.2 392 29.1
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.1e-18 98.2 385 28.1
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.7e-18 97.1 321 29.6
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.8e-17 95.1 270 27.8
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.8e-17 95.1 392 27.6
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 2.4e-17 94.7 452 27.2
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 2.4e-17 94.7 460 26.7
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 4.0e-17 94.0 393 29.5
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.2e-16 92.4 378 28.0
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.8e-16 90.1 392 27.8
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.3e-15 89.0 405 24.7
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.4e-14 85.5 233 30.5
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 4.2e-14 84.0 377 26.8
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 7.1e-14 83.2 290 27.6
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 5.1e-12 77.0 112 40.2
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 1.6e-10 72.0 132 37.1
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.5e-08 65.5 167 29.3
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.6e-08 64.7 122 36.1
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 5.8e-08 63.5 180 33.3


User provided reference genes

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