Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.7e-255 884.4 458 100.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.5e-136 489.2 430 61.4
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.0e-99 367.1 429 48.7
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.2e-97 359.8 406 49.3
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 4.2e-97 359.4 402 50.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 7.1e-97 358.6 409 48.7
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 9.3e-97 358.2 414 48.1
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-96 356.7 410 48.0
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.6e-96 355.9 446 47.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-95 354.0 409 47.9
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 5.1e-95 352.4 409 49.4
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.6e-95 352.1 410 48.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.6e-95 352.1 404 49.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.7e-95 351.7 404 49.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.1e-94 351.3 430 47.2
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.5e-94 350.9 408 48.0
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.9e-94 350.5 431 45.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-93 347.1 449 45.0
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.2e-93 345.5 429 46.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.4e-92 344.4 409 46.7
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.1e-92 343.2 409 46.7
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 6.9e-92 342.0 439 45.8
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 6.9e-92 342.0 428 45.1
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 9.0e-92 341.7 431 46.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-91 340.5 408 47.1
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.9e-91 338.2 440 43.9
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 9.9e-91 338.2 382 49.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.7e-90 337.4 409 46.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.7e-90 337.4 409 44.5
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.2e-90 337.0 417 45.8
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.9e-90 336.7 435 45.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.9e-90 335.9 408 48.0
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.4e-90 335.5 438 44.7
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 8.4e-90 335.1 433 45.3
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.4e-89 334.3 407 45.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.9e-89 334.0 437 45.5
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 4.2e-89 332.8 434 43.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.2e-89 332.8 417 47.0
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 4.2e-89 332.8 422 43.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 5.4e-89 332.4 429 43.1
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 7.1e-89 332.0 422 43.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 9.3e-89 331.6 428 44.9
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 9.3e-89 331.6 434 43.5
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.2e-88 331.3 422 43.1
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.2e-88 331.3 429 44.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.7e-88 330.1 439 44.6
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-88 330.1 435 44.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.7e-88 330.1 410 47.3
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.7e-88 330.1 406 47.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.5e-88 329.7 406 46.8
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.6e-88 329.3 407 45.0
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 6.0e-88 328.9 414 44.7
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 6.0e-88 328.9 408 46.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.9e-88 328.6 439 43.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 7.9e-88 328.6 429 44.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.9e-88 328.6 410 46.8
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.3e-87 327.8 409 43.5
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.3e-87 327.8 406 45.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.3e-87 327.8 409 45.2
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.0e-87 326.6 425 43.5
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.0e-87 326.6 448 44.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.9e-87 326.2 407 43.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.9e-87 326.2 407 45.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 3.9e-87 326.2 407 45.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.9e-87 326.2 407 45.2
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 5.1e-87 325.9 427 43.8
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 6.7e-87 325.5 427 44.3
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 6.7e-87 325.5 406 44.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.7e-87 325.1 407 44.7
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 8.7e-87 325.1 439 44.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.1e-86 324.7 407 44.7
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.5e-86 324.3 422 42.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.9e-86 323.9 417 44.4
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 3.3e-86 323.2 413 45.8
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 3.3e-86 323.2 413 45.8
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 3.3e-86 323.2 432 43.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 5.6e-86 322.4 407 43.7
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 5.6e-86 322.4 425 43.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-86 322.4 408 44.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-86 322.4 408 44.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 7.4e-86 322.0 440 42.3
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 9.6e-86 321.6 461 41.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 9.6e-86 321.6 413 44.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.8e-85 320.1 407 46.7
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 3.7e-85 319.7 408 43.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 8.1e-85 318.5 438 42.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.1e-84 316.6 464 41.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.9e-84 315.5 438 42.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 9.0e-84 315.1 430 42.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-83 314.3 429 44.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.0e-83 313.9 413 43.1
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.0e-83 313.9 433 42.7
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.6e-83 313.5 435 43.4
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.6e-83 313.5 420 42.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 3.4e-83 313.2 396 44.7
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 4.5e-83 312.8 441 42.0
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.8e-83 312.4 428 43.7
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 9.9e-83 311.6 434 43.8
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.9e-82 309.3 428 43.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 6.4e-82 308.9 427 41.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.4e-81 307.8 312 54.8
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 5.5e-81 305.8 427 42.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.5e-80 303.1 356 46.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.6e-80 302.8 413 42.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 6.0e-80 302.4 471 39.1
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.8e-79 300.8 409 43.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.9e-79 299.7 409 41.8
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 6.7e-79 298.9 407 42.5
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.1e-78 298.1 421 44.7
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.3e-78 296.6 471 39.5
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-77 294.7 435 41.8
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.2e-77 292.0 498 38.6
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.8e-76 290.8 434 40.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.5e-75 287.7 401 43.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.3e-74 284.6 407 39.6
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.9e-73 280.8 413 41.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.0e-72 275.8 382 41.4
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.8e-71 274.2 421 41.1
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.9e-71 273.1 428 38.3
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.4e-65 254.6 420 38.6
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 9.4e-65 251.9 299 45.5
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.1e-64 250.8 429 36.8
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 5.1e-63 246.1 304 45.4
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-62 243.8 408 40.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.3e-61 241.5 335 42.4
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.6e-59 233.8 347 39.8
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.2e-58 230.7 407 37.1
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.2e-56 224.9 494 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.5e-51 208.0 139 71.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.1e-49 201.8 407 34.2
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-49 201.1 325 40.3
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.9e-47 193.4 179 53.6
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.1e-44 183.7 169 55.6
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 9.1e-44 182.2 178 50.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.6e-40 171.4 244 43.0
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.7e-38 162.9 196 45.9
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.8e-36 157.9 192 43.8
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.5e-34 149.4 192 45.8
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 8.0e-32 142.5 187 39.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 3.4e-30 137.1 114 62.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.2e-29 134.4 407 29.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.1e-20 103.6 153 40.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 7.0e-20 102.8 107 49.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.3e-18 98.6 120 44.2
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.9e-18 97.4 91 53.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.3e-15 87.8 90 51.1
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.9e-15 85.9 140 38.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.0e-10 72.4 438 25.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-09 68.6 167 32.9
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 5.6e-09 66.6 434 24.2
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-08 65.5 118 35.6


User provided reference genes

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