Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.7e-117 424.9 208 100.0
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.0e-60 234.6 177 64.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 7.0e-44 181.4 165 52.7
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.6e-43 180.3 168 51.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.1e-43 179.9 160 53.8
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 2.1e-43 179.9 171 52.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 6.0e-43 178.3 168 51.2
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.0e-43 178.3 160 52.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 7.8e-43 177.9 171 52.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 7.8e-43 177.9 183 49.2
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.8e-43 177.9 175 50.3
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 7.8e-43 177.9 168 51.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.0e-42 177.6 168 51.8
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.0e-42 177.6 168 53.0
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.3e-42 177.2 178 50.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.7e-42 176.8 177 49.2
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.7e-42 176.8 169 52.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.7e-42 176.8 167 49.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.7e-42 176.8 168 51.8
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.3e-42 176.4 178 50.0
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.3e-42 176.4 167 51.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.0e-42 176.0 173 50.3
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 3.0e-42 176.0 167 49.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 3.9e-42 175.6 171 51.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-42 175.6 170 52.4
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 3.9e-42 175.6 169 50.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.1e-42 175.3 171 51.5
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 5.1e-42 175.3 169 50.9
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 5.1e-42 175.3 168 50.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 6.6e-42 174.9 176 49.4
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 6.6e-42 174.9 176 49.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.6e-42 174.9 168 50.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 6.6e-42 174.9 160 50.6
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-41 174.1 169 50.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-41 174.1 176 49.4
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.1e-41 174.1 167 50.3
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.1e-41 174.1 167 50.3
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.1e-41 174.1 145 56.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-41 173.7 176 49.4
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-41 173.7 176 49.4
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-41 173.3 175 47.4
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-41 173.3 175 47.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.9e-41 173.3 168 50.0
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.9e-41 173.3 167 52.1
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.9e-41 173.3 176 48.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.5e-41 172.9 161 52.8
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.3e-41 172.2 161 51.6
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 4.3e-41 172.2 169 49.1
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 5.6e-41 171.8 177 48.0
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.6e-41 171.8 169 49.7
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.6e-41 171.8 167 50.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 9.5e-41 171.0 161 50.9
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 9.5e-41 171.0 167 49.7
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 9.5e-41 171.0 160 50.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 9.5e-41 171.0 160 50.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.5e-41 171.0 179 49.2
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 9.5e-41 171.0 171 49.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-40 170.6 164 48.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.1e-40 169.9 161 52.2
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.1e-40 169.9 160 50.0
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.1e-40 169.9 160 50.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.1e-40 169.9 160 50.0
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.8e-40 169.5 177 48.0
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.8e-40 169.5 170 50.6
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.6e-40 169.1 160 51.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.6e-40 169.1 163 48.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 3.6e-40 169.1 167 48.5
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 4.7e-40 168.7 160 50.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 6.2e-40 168.3 178 45.5
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 6.2e-40 168.3 178 45.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 6.2e-40 168.3 178 45.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 6.2e-40 168.3 178 45.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 6.2e-40 168.3 178 45.5
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 6.2e-40 168.3 159 50.9
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 8.1e-40 167.9 162 52.5
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.1e-40 167.9 170 50.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.1e-40 167.9 168 48.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-39 167.2 161 52.8
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-39 167.2 162 52.5
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-39 167.2 170 49.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.8e-39 166.8 169 51.5
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.8e-39 166.8 160 48.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.8e-39 166.8 160 48.8
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.8e-39 166.8 169 50.9
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.8e-39 166.8 168 48.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-39 166.4 178 44.9
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.3e-39 166.4 167 48.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-39 166.4 167 48.5
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.3e-39 166.4 168 48.2
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.1e-39 166.0 167 47.3
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.1e-39 166.0 167 47.9
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.1e-39 166.0 160 51.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 3.1e-39 166.0 167 48.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.1e-39 166.0 167 47.9
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.1e-39 166.0 170 48.8
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.1e-39 166.0 160 49.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.0e-39 165.6 162 51.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-39 165.6 162 51.9
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.0e-39 165.6 168 48.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 4.0e-39 165.6 169 50.3
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.0e-39 165.6 168 49.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.0e-39 165.6 168 49.4
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.0e-39 165.6 168 49.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.2e-39 165.2 168 49.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 6.8e-39 164.9 168 48.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.8e-39 164.9 160 48.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.9e-39 164.5 167 47.9
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.5e-38 163.7 160 50.6
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.5e-38 163.7 166 47.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.5e-38 163.7 166 47.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.5e-38 163.7 170 48.8
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.5e-38 163.7 170 46.5
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.0e-38 163.3 168 47.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.6e-38 162.9 170 47.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 3.4e-38 162.5 160 48.1
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 4.4e-38 162.2 168 48.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 7.5e-38 161.4 160 47.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 9.9e-38 161.0 160 48.1
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.2e-37 159.8 163 50.9
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.2e-37 159.8 173 43.9
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.2e-37 159.8 169 47.3
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.9e-37 159.5 160 53.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.9e-37 159.5 170 48.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.4e-37 158.3 168 47.0
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.4e-37 158.3 171 43.9
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.4e-37 158.3 171 43.9
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 6.4e-37 158.3 150 50.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-36 157.5 160 45.0
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.1e-36 157.5 160 45.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.4e-36 157.1 130 58.5
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.4e-36 156.4 167 43.7
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 3.2e-36 156.0 170 44.1
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.2e-36 156.0 160 44.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.1e-36 155.6 161 50.3
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.1e-36 154.8 163 50.3
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 7.1e-36 154.8 160 46.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.1e-36 154.8 160 43.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.2e-35 154.1 163 45.4
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.0e-34 151.0 191 41.9
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.9e-34 149.1 123 56.1
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.3e-33 146.0 152 48.7
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 3.3e-33 146.0 149 48.3
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 4.3e-33 145.6 149 48.3
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.8e-31 140.2 168 45.2
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-29 133.7 177 44.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.7e-26 123.6 177 38.4
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.2e-24 117.5 80 66.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.6e-24 115.9 88 62.5
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.6e-24 115.9 88 62.5
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 4.4e-22 109.0 170 36.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 8.4e-21 104.8 167 35.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-20 102.8 129 38.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.3e-17 92.8 176 35.8
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-16 90.1 171 34.5
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.6e-16 89.4 131 32.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.4e-15 87.4 89 48.3
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 9.0e-15 84.7 86 46.5
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-13 80.5 222 28.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 9.0e-07 58.2 40 67.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.5e-06 57.4 78 35.9


User provided reference genes

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