Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 2.4e-76 288.9 160 100.0
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 6.4e-29 131.3 152 53.3
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.4e-28 128.3 154 51.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 9.3e-28 127.5 152 51.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.6e-27 126.7 154 52.6
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.6e-27 126.7 155 51.0
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.3e-26 123.6 152 50.0
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.3e-26 123.6 154 48.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.8e-26 123.2 164 43.9
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.8e-26 123.2 156 48.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 3.9e-26 122.1 159 47.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.5e-25 120.2 154 49.4
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.5e-25 120.2 154 46.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.5e-25 120.2 154 45.5
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.9e-25 119.8 152 48.0
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.9e-25 119.8 152 49.3
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.3e-25 119.0 153 45.8
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 3.3e-25 119.0 154 48.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 3.3e-25 119.0 156 51.3
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 4.3e-25 118.6 156 47.4
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.3e-25 118.6 158 43.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 7.4e-25 117.9 156 46.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 9.6e-25 117.5 158 48.7
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 9.6e-25 117.5 153 46.4
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.3e-24 117.1 159 45.9
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.3e-24 117.1 156 46.8
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.6e-24 116.7 153 47.1
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.6e-24 116.7 148 48.6
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.8e-24 115.9 155 47.7
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 4.8e-24 115.2 167 46.1
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 6.2e-24 114.8 154 42.9
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 6.2e-24 114.8 154 42.9
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 6.2e-24 114.8 154 42.9
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 8.1e-24 114.4 156 45.5
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.1e-23 114.0 153 46.4
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.8e-23 113.2 154 45.5
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.8e-23 113.2 158 46.2
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.4e-23 112.8 176 43.8
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-23 112.8 154 46.1
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.1e-23 112.5 153 45.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.2e-22 110.5 154 49.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.2e-22 110.5 153 45.8
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.2e-22 110.5 151 46.4
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.2e-22 110.5 154 42.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.2e-22 110.5 155 46.5
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.5e-22 110.2 129 53.5
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.6e-22 109.4 145 46.2
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.6e-22 109.4 158 42.4
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 3.4e-22 109.0 156 45.5
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 3.4e-22 109.0 146 44.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.5e-22 108.6 156 44.2
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.8e-22 108.2 160 44.4
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 5.8e-22 108.2 163 42.3
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.6e-22 107.8 154 46.1
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 9.9e-22 107.5 145 45.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 9.9e-22 107.5 145 45.5
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.3e-21 107.1 166 44.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.7e-21 106.7 156 42.3
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 4.9e-21 105.1 145 44.8
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.4e-21 104.8 158 44.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 8.4e-21 104.4 153 41.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.1e-20 104.0 153 47.7
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.9e-20 103.2 154 43.5
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 4.2e-20 102.1 159 42.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.5e-20 101.7 172 40.1
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 7.1e-20 101.3 154 40.9
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 9.3e-20 100.9 156 44.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.2e-19 100.5 155 41.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.7e-19 99.4 153 42.5
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 3.5e-19 99.0 158 42.4
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 3.5e-19 99.0 153 42.5
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 3.5e-19 99.0 158 41.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 3.5e-19 99.0 161 40.4
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 4.6e-19 98.6 153 42.5
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 4.6e-19 98.6 153 43.1
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.6e-19 98.6 149 39.6
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.9e-19 97.8 153 41.2
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 7.9e-19 97.8 153 41.8
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 7.9e-19 97.8 154 43.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-18 97.1 154 42.9
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.3e-18 97.1 154 40.3
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.3e-18 97.1 169 40.8
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.8e-18 96.7 149 40.9
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.8e-18 96.7 146 41.1
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.3e-18 96.3 153 43.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 3.0e-18 95.9 154 42.9
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 5.1e-18 95.1 154 42.9
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 5.1e-18 95.1 156 41.0
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 8.7e-18 94.4 159 40.3
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-17 93.6 156 39.1
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.5e-17 93.6 154 37.7
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-17 93.2 153 45.8
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.5e-17 92.8 147 40.1
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.5e-17 92.8 121 51.2
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 3.3e-17 92.4 159 42.1
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 5.6e-17 91.7 148 40.5
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 7.4e-17 91.3 138 43.5
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 9.6e-17 90.9 154 40.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-16 90.5 159 42.1
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-16 90.1 145 42.1
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.7e-16 89.0 153 35.9
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 8.2e-16 87.8 139 41.0
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 8.2e-16 87.8 139 41.0
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 8.2e-16 87.8 139 40.3
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.4e-15 87.0 153 41.2
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 5.3e-15 85.1 112 47.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.0e-15 84.3 147 39.5
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-14 84.0 146 39.0
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.0e-14 83.2 124 50.8
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-14 82.8 147 40.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.8e-14 81.6 147 39.5
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.8e-14 81.6 129 40.3
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.2e-13 79.7 147 38.1
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.8e-13 79.0 117 46.2
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.4e-13 77.8 178 34.8
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.9e-12 76.6 110 44.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 4.2e-12 75.5 132 37.9
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 5.5e-12 75.1 79 50.6
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 1.2e-11 73.9 136 38.2
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 2.1e-11 73.2 132 37.1
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.3e-10 70.5 78 44.9
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.8e-10 70.1 112 41.1
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.8e-10 70.1 159 33.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-10 69.7 76 48.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.0e-10 69.3 146 34.9
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 6.7e-10 68.2 101 42.6
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 8.7e-10 67.8 142 37.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.1e-09 67.4 80 47.5
Cre02.g097334 Chlamydomonas reinhardtii HOM05D004927 ORTHO05D005798 3.3e-09 65.9 160 32.5
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 5.7e-09 65.1 154 34.4
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 5.7e-09 65.1 42 73.8
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 7.4e-09 64.7 96 43.8
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.3e-08 63.9 148 39.2
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.3e-08 63.9 51 66.7
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-06 56.2 53 54.7
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 7.7e-06 54.7 52 50.0


User provided reference genes

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