Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 8.9e-193 676.8 348 100.0
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.4e-99 365.9 341 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.9e-94 350.1 353 50.1
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.9e-82 309.7 336 45.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.4e-81 306.6 341 45.7
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.1e-81 305.8 346 45.4
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.4e-81 305.4 341 45.5
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.1e-81 305.1 337 47.8
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.2e-80 304.3 342 43.6
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.7e-80 303.1 343 44.6
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.5e-80 302.8 343 44.0
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.7e-79 300.4 339 44.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.9e-79 299.3 338 44.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.9e-79 299.3 343 44.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 8.6e-79 298.1 341 43.7
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 8.6e-79 298.1 337 43.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.9e-78 297.0 337 43.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.3e-78 296.2 343 43.1
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.3e-78 295.8 343 44.6
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 4.3e-78 295.8 343 42.6
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 7.3e-78 295.0 337 42.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.3e-78 295.0 346 43.6
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.6e-77 292.7 337 43.6
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 4.7e-77 292.4 343 44.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 8.1e-77 291.6 347 43.2
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 8.1e-77 291.6 349 42.7
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.1e-76 291.2 337 40.9
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.4e-76 290.0 343 43.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.1e-76 289.7 344 43.0
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.1e-76 289.7 340 40.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.1e-76 289.7 339 42.5
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.0e-76 289.3 349 42.1
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 6.8e-76 288.5 342 43.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 8.9e-76 288.1 342 41.2
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.2e-75 287.7 337 44.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.2e-75 287.7 340 40.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-75 287.3 337 40.9
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.5e-75 287.3 364 39.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.0e-75 287.0 357 40.9
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-75 286.6 353 41.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.4e-75 285.8 341 42.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 7.6e-75 285.0 343 43.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 9.9e-75 284.6 337 43.6
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 9.9e-75 284.6 341 42.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.2e-74 283.5 337 43.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.2e-74 283.5 340 42.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.8e-74 282.7 344 40.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.8e-74 282.7 341 39.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.9e-74 282.3 340 41.8
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.9e-74 282.3 339 40.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 6.4e-74 282.0 345 42.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.4e-74 282.0 340 42.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 6.4e-74 282.0 337 41.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 6.4e-74 282.0 338 41.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 8.4e-74 281.6 344 39.8
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-73 281.2 340 41.8
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.1e-73 281.2 346 40.5
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-73 280.8 340 41.5
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.4e-73 280.8 347 40.6
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-73 280.8 341 41.3
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.9e-73 280.4 345 41.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.9e-73 280.4 345 42.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.9e-73 280.4 342 41.2
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.4e-73 280.0 345 41.2
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.4e-73 280.0 342 41.8
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.4e-73 280.0 338 42.9
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 5.4e-73 278.9 337 40.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 5.4e-73 278.9 338 41.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.1e-73 278.5 340 41.2
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 7.1e-73 278.5 345 41.2
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.3e-73 278.1 343 42.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.2e-72 277.7 338 42.9
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-72 277.7 341 41.1
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.2e-72 277.7 342 42.1
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.1e-72 276.9 340 40.0
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.1e-72 276.9 355 40.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.7e-72 276.6 342 40.4
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.7e-72 276.6 337 39.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 3.5e-72 276.2 328 45.4
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.6e-72 275.8 342 40.4
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 7.8e-72 275.0 338 40.5
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 7.8e-72 275.0 342 41.2
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.0e-71 274.6 341 41.9
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.0e-71 274.6 337 42.7
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.0e-71 274.6 337 39.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.0e-71 274.6 340 42.4
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.3e-71 274.2 337 41.8
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.7e-71 273.9 338 40.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.7e-71 273.9 347 40.9
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 2.3e-71 273.5 337 42.7
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.0e-71 273.1 337 40.4
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 5.1e-71 272.3 344 40.4
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.1e-71 272.3 346 40.8
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.6e-71 271.9 342 40.4
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.5e-70 270.8 337 41.2
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 7.3e-70 268.5 338 41.4
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.6e-69 267.3 338 41.4
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 2.1e-69 266.9 338 42.9
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.1e-69 266.9 344 40.7
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.4e-68 263.5 338 42.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.0e-68 262.7 338 40.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.3e-68 262.3 337 42.1
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.0e-67 260.4 338 40.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.0e-67 260.4 338 39.9
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 4.4e-67 259.2 338 40.2
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 9.9e-67 258.1 340 39.1
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 3.8e-66 256.1 346 40.5
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 6.4e-66 255.4 337 40.4
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 8.4e-66 255.0 349 39.3
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-65 253.4 338 38.8
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.2e-65 253.1 342 40.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.4e-65 252.3 352 38.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 9.3e-65 251.5 341 41.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.2e-64 251.1 309 40.8
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.1e-64 250.4 350 38.3
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.1e-64 250.4 341 39.6
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.9e-64 248.4 339 37.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 3.0e-63 246.5 338 39.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 3.0e-63 246.5 343 38.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.0e-63 246.5 338 37.0
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 6.6e-63 245.4 337 39.2
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 6.6e-63 245.4 337 39.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.5e-62 244.2 339 38.3
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.5e-62 244.2 340 39.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.5e-62 243.4 343 37.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-62 243.4 345 37.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.6e-61 239.6 341 38.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.6e-61 239.6 341 37.0
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.2e-61 238.8 345 37.1
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.1e-60 236.5 348 36.5
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.6e-59 233.4 313 38.7
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.8e-58 229.6 266 42.1
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.2e-57 226.5 276 43.8
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.2e-57 226.5 444 32.0
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 7.1e-57 225.3 297 39.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.7e-56 223.4 293 39.9
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 4.5e-51 206.1 290 38.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.2e-50 203.8 238 44.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.1e-49 201.4 294 38.1
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.2e-49 199.9 260 37.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.7e-48 196.8 416 32.5
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 4.6e-48 196.1 290 37.6
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.3e-47 193.7 352 32.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.6e-45 187.6 240 41.2
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.6e-45 187.6 238 43.3
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.7e-45 186.4 242 40.5
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 6.3e-45 185.7 184 47.8
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.3e-45 185.7 280 36.8
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.1e-44 184.9 289 33.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 5.3e-44 182.6 276 37.7
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.0e-43 180.6 342 32.7
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 3.4e-43 179.9 276 37.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.2e-41 172.2 251 35.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-40 171.4 241 37.8
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.1e-40 170.6 238 39.1
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-38 164.1 337 30.0
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.2e-37 160.6 241 38.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.8e-37 160.2 237 38.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 9.0e-36 155.2 238 35.3
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 9.4e-33 145.2 287 31.7
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.6e-32 142.9 143 43.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.6e-30 137.1 127 48.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-24 117.5 138 41.3
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.1e-22 111.7 101 47.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 7.4e-22 109.0 149 37.6
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-20 104.4 111 43.2
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-20 104.4 108 44.4
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 1.1e-17 95.1 217 26.3
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 4.2e-17 93.2 139 34.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.6e-16 90.1 99 47.5
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.5e-14 82.4 65 52.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.6e-11 74.7 96 39.6
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.0e-11 74.3 48 60.4
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.9e-09 67.8 148 31.1


User provided reference genes

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