Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 0.0e+00 1352.4 989 100.0
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.4e-291 1006.5 994 81.8
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.2e-27 129.8 408 34.1
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 9.8e-19 100.1 674 55.5
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 4.7e-13 81.3 134 41.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.1e-12 80.1 161 37.9
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 5.2e-12 77.8 111 43.2
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 5.2e-12 77.8 116 44.8
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.9e-12 77.0 182 34.1
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.6e-11 75.5 123 37.4
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.6e-11 75.5 120 38.3
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 5.8e-11 74.3 116 43.1
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 7.5e-11 73.9 116 43.1
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 7.5e-11 73.9 116 43.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.8e-11 73.6 117 41.0
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.8e-11 73.6 117 41.0
AagrBONN_evm.TU.Sc2ySwM_117.4020 Anthoceros agrestis HOM05D031910 ORTHO05D004558 9.8e-11 73.6 203 36.9
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.2e-10 72.4 168 33.3
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.2e-10 72.4 206 32.0
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.2e-10 72.4 163 35.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.9e-10 71.2 174 33.3
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 4.9e-10 71.2 121 40.5
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 6.4e-10 70.9 152 34.9
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 6.4e-10 70.9 121 44.6
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 8.3e-10 70.5 121 41.3
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.1e-09 70.1 126 38.1
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.1e-09 70.1 142 37.3
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.1e-09 70.1 118 39.8
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.4e-09 69.7 124 38.7
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.4e-09 69.7 199 35.7
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.4e-09 69.7 130 37.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 1.4e-09 69.7 111 42.3
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.4e-09 69.7 121 38.0
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.4e-09 69.7 156 35.9
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.9e-09 69.3 112 42.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 3.2e-09 68.6 124 41.9
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 3.2e-09 68.6 120 41.7
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.2e-09 68.6 168 32.7
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.2e-09 68.6 168 32.7
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 4.1e-09 68.2 237 30.4
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.1e-09 68.2 162 35.2
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.1e-09 68.2 119 42.0
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.1e-09 68.2 118 40.7
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 7.1e-09 67.4 124 37.9
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 7.1e-09 67.4 110 40.9
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 7.1e-09 67.4 124 37.1
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 7.1e-09 67.4 111 36.9
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.1e-09 67.4 122 39.3
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 7.1e-09 67.4 124 38.7
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 9.2e-09 67.0 119 36.1
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 9.2e-09 67.0 119 36.1
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 9.2e-09 67.0 107 42.1
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.2e-08 66.6 124 37.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.2e-08 66.6 117 39.3
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-08 66.6 117 38.5
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.2e-08 66.6 122 39.3
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.6e-08 66.2 112 42.9
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.1e-08 65.9 112 43.8
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.1e-08 65.9 107 41.1
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.1e-08 65.9 120 39.2
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 2.7e-08 65.5 155 34.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 2.7e-08 65.5 117 39.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 3.5e-08 65.1 116 40.5
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.5e-08 65.1 237 31.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.5e-08 65.1 237 30.8
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 3.5e-08 65.1 120 38.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.5e-08 65.1 110 38.2
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 4.6e-08 64.7 125 37.6
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.6e-08 64.7 123 39.8
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 4.6e-08 64.7 111 38.7
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.6e-08 64.7 139 33.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 4.6e-08 64.7 128 40.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 6.0e-08 64.3 115 38.3
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 6.0e-08 64.3 117 38.5
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 6.0e-08 64.3 115 39.1
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 6.0e-08 64.3 114 41.2
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 6.0e-08 64.3 160 35.6
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 6.0e-08 64.3 59 52.5
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 6.0e-08 64.3 114 41.2
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 6.0e-08 64.3 110 39.1
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 6.0e-08 64.3 115 40.0
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 6.0e-08 64.3 115 41.7
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 7.8e-08 63.9 120 41.7
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 7.8e-08 63.9 117 36.8
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.0e-07 63.5 58 55.2
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.0e-07 63.5 109 43.1
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.0e-07 63.5 110 39.1
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.0e-07 63.5 155 34.8
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.0e-07 63.5 110 39.1
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.0e-07 63.5 111 41.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.0e-07 63.5 127 37.8
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.0e-07 63.5 119 39.5
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.0e-07 63.5 119 37.8
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 1.0e-07 63.5 107 38.3
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.0e-07 63.5 58 53.4
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 1.0e-07 63.5 116 37.9
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.0e-07 63.5 111 37.8
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.0e-07 63.5 123 39.0
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.0e-07 63.5 161 32.9
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.3e-07 63.2 119 38.7
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-07 63.2 116 36.2
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-07 63.2 163 33.1
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.7e-07 62.8 124 37.1
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.7e-07 62.8 117 36.8
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.7e-07 62.8 59 50.8
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.7e-07 62.8 119 37.0
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.3e-07 62.4 125 37.6
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 2.3e-07 62.4 117 41.9
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 3.0e-07 62.0 191 31.9
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.0e-07 62.0 109 41.3
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 3.0e-07 62.0 55 60.0
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.0e-07 62.0 112 41.1
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.0e-07 62.0 112 41.1
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 3.0e-07 62.0 162 34.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 3.9e-07 61.6 110 38.2
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 3.9e-07 61.6 110 38.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 3.9e-07 61.6 233 29.2
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.9e-07 61.6 151 31.8
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 3.9e-07 61.6 126 35.7
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 3.9e-07 61.6 152 32.9
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 5.1e-07 61.2 116 35.3
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 6.6e-07 60.8 209 30.6
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 6.6e-07 60.8 112 38.4
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 8.6e-07 60.5 193 30.1
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 8.6e-07 60.5 112 38.4
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.1e-06 60.1 37 70.3
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.1e-06 60.1 274 28.1
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.1e-06 60.1 55 52.7
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.1e-06 60.1 240 30.8
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.5e-06 59.7 104 41.3
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.5e-06 59.7 36 72.2
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.5e-06 59.7 240 30.8
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 1.9e-06 59.3 58 46.6
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.5e-06 58.9 103 39.8
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.5e-06 58.9 116 34.5
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.5e-06 58.9 161 32.9
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.3e-06 58.5 130 38.5
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.3e-06 58.5 58 46.6
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 3.3e-06 58.5 140 32.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 4.3e-06 58.2 181 31.5
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.3e-06 58.2 107 39.3
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 4.3e-06 58.2 109 34.9
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 5.6e-06 57.8 123 37.4
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 5.6e-06 57.8 123 37.4
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 7.3e-06 57.4 58 48.3
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 7.3e-06 57.4 36 66.7
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 7.3e-06 57.4 58 48.3
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 9.5e-06 57.0 38 65.8
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 46.6
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 9.5e-06 57.0 55 49.1
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 9.5e-06 57.0 37 62.2
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 9.5e-06 57.0 70 47.1
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 48.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 50.0
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 50.0
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 9.5e-06 57.0 58 46.6
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 9.5e-06 57.0 58 46.6
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 9.5e-06 57.0 92 40.2
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 9.5e-06 57.0 65 50.8
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 9.5e-06 57.0 65 50.8
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 46.6
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 51.7
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 9.5e-06 57.0 55 50.9
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 9.5e-06 57.0 58 46.6


User provided reference genes

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