Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.8e-115 416.8 205 100.0
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 5.6e-94 347.8 188 89.4
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.2e-93 346.7 188 88.3
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 8.4e-90 334.0 188 84.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-89 333.6 189 85.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.4e-89 333.2 188 83.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 4.2e-89 331.6 188 83.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.2e-89 331.6 188 82.4
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.8e-88 327.4 188 80.3
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.0e-87 325.5 191 77.5
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.0e-87 325.5 191 77.5
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.0e-87 325.5 191 77.5
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.9e-87 325.1 191 77.5
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.6e-86 321.2 188 77.7
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 7.3e-86 320.9 188 78.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 7.3e-86 320.9 188 77.7
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 7.3e-86 320.9 188 77.7
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 9.6e-86 320.5 188 77.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 9.6e-86 320.5 188 77.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 9.6e-86 320.5 188 77.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.3e-85 320.1 188 77.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.6e-85 319.7 188 77.1
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.6e-85 319.7 188 77.1
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.6e-85 319.7 188 77.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.1e-85 319.3 188 77.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.1e-85 319.3 188 78.2
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.8e-85 318.9 188 76.6
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.8e-85 318.9 188 76.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.6e-85 318.5 188 76.6
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.6e-85 318.5 188 73.9
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 4.8e-85 318.2 188 76.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 6.2e-85 317.8 188 77.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.1e-84 317.0 188 76.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.1e-84 317.0 188 75.5
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.1e-84 317.0 188 76.1
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.1e-84 317.0 188 76.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.4e-84 316.6 188 76.6
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.4e-84 316.6 188 76.1
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.4e-84 316.6 188 73.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.4e-84 316.6 188 77.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.8e-84 316.2 188 77.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.8e-84 316.2 188 77.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.8e-84 316.2 188 77.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.8e-84 316.2 188 77.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 76.1
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 77.1
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 76.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 76.6
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 75.0
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 77.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 2.4e-84 315.8 188 75.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.1e-84 315.5 188 77.1
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 3.1e-84 315.5 188 76.1
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 4.0e-84 315.1 189 73.0
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 4.0e-84 315.1 189 73.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.0e-84 315.1 189 72.5
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 4.0e-84 315.1 188 75.5
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.0e-84 315.1 188 75.0
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.0e-84 315.1 188 75.0
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 4.0e-84 315.1 188 74.5
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 5.3e-84 314.7 190 74.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 5.3e-84 314.7 188 76.6
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 5.3e-84 314.7 188 76.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 5.3e-84 314.7 188 77.1
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 6.9e-84 314.3 188 72.3
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.9e-84 314.3 189 72.5
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 6.9e-84 314.3 188 76.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 9.0e-84 313.9 189 72.5
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 9.0e-84 313.9 188 75.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 9.0e-84 313.9 188 75.0
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 9.0e-84 313.9 192 72.9
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-83 313.5 189 72.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.5e-83 313.2 188 72.3
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.5e-83 313.2 188 76.1
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.0e-83 312.8 188 72.3
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.0e-83 312.8 188 76.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.0e-83 312.8 188 75.5
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.0e-83 312.8 188 75.5
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.0e-83 312.8 188 76.1
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 2.6e-83 312.4 188 71.8
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.6e-83 312.4 188 71.8
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 2.6e-83 312.4 188 75.0
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.6e-83 312.4 188 75.5
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 3.4e-83 312.0 188 75.0
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.4e-83 312.0 187 77.0
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.4e-83 312.0 188 75.5
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.5e-83 311.6 188 71.8
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 9.9e-83 310.5 196 75.0
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.2e-82 309.3 188 74.5
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.2e-82 309.3 200 72.0
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.2e-82 309.3 188 75.0
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.8e-82 308.5 188 73.9
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 4.9e-82 308.1 188 74.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.4e-81 305.8 212 67.5
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 4.2e-81 305.1 183 74.3
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.2e-80 303.5 189 73.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.6e-80 303.1 203 70.9
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.7e-80 302.4 215 66.5
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 2.7e-80 302.4 201 70.1
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.6e-80 301.6 195 71.3
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 6.0e-80 301.2 221 64.3
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-76 290.4 229 61.1
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.0e-75 286.2 170 77.6
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 7.6e-75 284.3 183 72.7
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 7.6e-75 284.3 183 72.7
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.2e-73 278.5 169 75.1
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 7.1e-73 277.7 170 70.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.6e-72 276.6 169 75.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.7e-71 270.8 161 77.0
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.7e-69 265.4 160 75.6
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.6e-67 259.2 173 71.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 7.6e-67 257.7 163 71.8
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 7.1e-65 251.1 188 63.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.4e-62 241.1 210 58.6
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.3e-61 240.4 170 67.6
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-58 229.9 189 60.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.2e-58 229.6 208 55.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.7e-56 222.6 183 59.6
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.3e-52 208.4 111 82.9
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.2e-51 207.2 140 67.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 4.2e-49 198.7 111 81.1
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 7.2e-49 198.0 107 81.3
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.3e-46 189.1 149 62.4
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.2e-41 172.2 159 52.8
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 9.4e-41 171.0 129 61.2
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.7e-40 169.5 109 71.6
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.4e-39 167.2 109 68.8
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.8e-39 166.8 109 71.6
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-36 156.0 79 86.1
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 7.0e-36 154.8 79 86.1
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 9.1e-36 154.5 79 86.1
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.6e-35 153.7 88 78.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.9e-35 151.8 80 83.8
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-33 146.0 155 47.1
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.3e-31 139.8 71 85.9
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 6.3e-29 131.7 68 85.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-28 128.6 68 79.4
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.5e-25 120.6 69 76.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.2e-25 119.4 84 64.3
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 7.2e-25 118.2 69 75.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 7.2e-25 118.2 69 75.4
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 7.2e-25 118.2 81 66.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.9e-17 93.6 87 56.3
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 5.5e-17 92.0 51 76.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.4e-15 87.4 47 76.6
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 4.1e-12 75.9 46 71.7
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 5.9e-11 72.0 37 81.1
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 5.9e-11 72.0 37 81.1
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 5.9e-11 72.0 37 81.1
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 5.9e-11 72.0 37 81.1


User provided reference genes

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