Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.0e-99 366.7 183 100.0
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 5.8e-42 174.9 159 54.1
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.7e-38 163.3 155 52.3
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 3.4e-34 149.1 156 48.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.5e-34 148.7 138 51.4
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.5e-34 148.7 148 50.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.9e-33 146.0 156 47.4
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.2e-32 142.5 147 47.6
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-31 140.6 147 46.9
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-31 140.6 147 46.9
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.2e-31 140.6 147 46.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.2e-31 140.6 147 45.6
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.1e-31 139.8 147 46.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.1e-31 139.8 147 46.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.1e-31 139.8 147 45.6
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.7e-31 139.4 148 47.3
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 4.6e-31 138.7 147 46.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 4.6e-31 138.7 147 46.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 6.0e-31 138.3 147 46.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.0e-31 138.3 147 46.9
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.0e-31 138.3 147 44.9
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.0e-30 137.5 146 47.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-30 136.7 151 45.0
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.3e-30 136.3 147 46.9
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.9e-30 135.6 154 43.5
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.9e-30 135.6 147 45.6
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.9e-30 135.6 156 44.2
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.9e-30 135.6 157 43.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 5.1e-30 135.2 154 43.5
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.1e-30 135.2 147 42.9
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 6.7e-30 134.8 154 46.1
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.1e-29 134.0 146 44.5
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.1e-29 134.0 148 44.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.5e-29 133.7 149 48.3
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.9e-29 133.3 155 43.2
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 3.3e-29 132.5 147 45.6
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.3e-29 132.5 147 44.2
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.3e-29 132.5 157 43.9
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.3e-29 132.5 154 42.9
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.3e-29 132.1 155 44.5
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.3e-29 132.1 147 44.2
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 4.3e-29 132.1 156 45.5
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 5.6e-29 131.7 153 43.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.3e-28 130.6 147 42.2
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.6e-28 130.2 147 43.5
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.6e-28 130.2 147 43.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.1e-28 129.8 155 43.2
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.1e-28 129.8 147 44.2
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.1e-28 129.8 155 41.9
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 2.1e-28 129.8 155 41.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.1e-28 129.8 156 42.3
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.1e-28 129.8 147 44.2
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.8e-28 129.4 147 44.9
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.7e-28 129.0 156 43.6
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.8e-28 128.6 147 42.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 4.8e-28 128.6 147 42.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 4.8e-28 128.6 147 43.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.1e-27 127.5 147 40.8
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.1e-27 127.5 147 42.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.1e-27 127.5 147 42.2
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.1e-27 127.5 147 44.2
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-27 127.5 155 44.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-27 127.5 155 44.5
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-27 127.5 146 42.5
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.4e-27 127.1 148 41.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-27 126.7 156 43.6
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.8e-27 126.7 147 42.9
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.4e-27 126.3 156 41.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.1e-27 125.9 136 47.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.1e-27 125.9 147 40.8
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 5.3e-27 125.2 149 41.6
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.9e-27 124.8 149 42.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 9.0e-27 124.4 147 42.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.5e-26 123.6 147 42.9
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.5e-26 123.6 147 40.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.5e-26 123.6 148 41.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.5e-26 123.6 147 40.8
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.5e-26 123.6 148 39.9
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.5e-26 123.6 164 41.5
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.5e-26 123.6 164 41.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.5e-26 123.6 148 41.9
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.0e-26 123.2 147 40.1
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.6e-26 122.9 148 42.6
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.6e-26 122.9 156 42.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.6e-26 122.9 147 42.2
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.5e-26 122.1 146 42.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 7.6e-26 121.3 154 40.9
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 7.6e-26 121.3 165 40.6
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 9.9e-26 120.9 155 40.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.3e-25 120.6 141 46.8
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.9e-25 119.4 147 41.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 4.9e-25 118.6 147 40.1
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 4.9e-25 118.6 148 40.5
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 4.9e-25 118.6 148 40.5
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.4e-25 118.2 156 39.1
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 6.4e-25 118.2 148 40.5
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 6.4e-25 118.2 148 40.5
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 6.4e-25 118.2 148 40.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 6.4e-25 118.2 135 47.4
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.4e-25 117.9 148 41.9
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 8.4e-25 117.9 148 39.2
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.4e-24 117.1 158 39.2
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.9e-24 116.7 156 38.5
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.9e-24 116.7 148 41.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.9e-24 116.7 147 39.5
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.4e-24 116.3 156 39.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.4e-24 116.3 148 41.2
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.4e-24 116.3 156 38.5
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.2e-24 115.9 148 39.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.2e-24 115.9 148 39.2
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 3.2e-24 115.9 146 39.0
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.2e-24 115.5 183 36.6
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.2e-24 115.5 156 38.5
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 7.1e-24 114.8 157 39.5
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 9.3e-24 114.4 156 37.2
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 9.3e-24 114.4 148 39.9
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 9.3e-24 114.4 148 37.8
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-23 114.0 173 37.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.1e-23 113.2 147 38.1
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.1e-23 113.2 156 36.5
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.1e-23 113.2 157 41.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.5e-23 112.5 156 36.5
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.5e-23 112.5 156 36.5
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.6e-23 112.1 156 37.8
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.0e-23 111.7 156 36.5
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 7.9e-23 111.3 156 36.5
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 7.9e-23 111.3 156 36.5
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.3e-22 110.5 156 37.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.0e-22 109.4 156 37.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-22 109.0 156 37.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 5.1e-22 108.6 155 37.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 8.7e-22 107.8 157 36.9
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 8.7e-22 107.8 155 37.4
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 8.7e-22 107.8 155 37.4
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 8.7e-22 107.8 187 35.3
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.1e-21 107.5 155 40.6
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.3e-20 104.0 147 38.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.6e-20 103.6 102 52.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.9e-19 98.2 101 44.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 9.0e-19 97.8 110 44.5
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-17 94.4 106 43.4
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-17 94.0 106 44.3
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.7e-17 93.6 162 33.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.4e-16 90.5 101 45.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 5.5e-16 88.6 135 36.3
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 7.1e-16 88.2 110 39.1
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 2.1e-15 86.7 98 42.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 6.0e-15 85.1 88 45.5
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.0e-14 84.3 97 42.3
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-09 67.8 89 38.2
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 6.7e-06 55.1 56 39.3


User provided reference genes

Program Settings