Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 0.0e+00 1186.0 567 100.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 564 86.2
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.1e-272 943.0 565 78.9
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.4e-272 941.8 565 78.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.5e-269 931.8 563 77.6
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.3e-261 904.8 565 75.6
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.2e-260 902.9 565 75.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 2.1e-260 902.1 561 76.3
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-259 899.8 565 75.9
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.3e-259 897.5 565 75.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.5e-258 896.0 567 75.8
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-258 895.6 561 76.3
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-258 895.6 561 76.3
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.0e-258 895.6 557 76.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.6e-258 895.2 565 76.8
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.6e-258 895.2 563 75.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.4e-258 894.4 565 74.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.8e-258 894.0 561 75.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.6e-258 893.6 565 74.7
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.3e-257 892.9 565 75.4
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 3.8e-257 891.3 565 74.3
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.8e-257 891.3 561 75.2
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.4e-257 890.6 565 75.8
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.1e-256 889.8 565 74.3
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.1e-256 889.8 561 75.8
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.4e-256 889.4 565 74.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.9e-256 889.0 565 74.2
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.9e-256 889.0 565 74.2
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.4e-256 888.6 561 75.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 4.2e-256 887.9 565 74.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 7.1e-256 887.1 565 73.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 9.3e-256 886.7 565 74.0
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.2e-255 886.3 565 73.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.2e-255 886.3 565 74.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.2e-255 886.3 564 74.5
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.6e-255 885.9 565 74.2
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.1e-255 885.6 565 75.2
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.7e-255 885.2 565 73.8
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.7e-255 885.2 565 73.8
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.5e-255 884.8 568 74.3
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.5e-255 884.8 568 73.9
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.5e-255 884.8 565 74.5
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.6e-255 884.4 565 73.6
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.0e-255 884.0 565 74.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.0e-255 884.0 565 74.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.3e-254 882.9 561 75.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 1.3e-254 882.9 563 75.7
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.3e-254 882.1 563 74.8
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.3e-254 882.1 565 74.5
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.9e-254 881.3 563 75.0
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.1e-254 880.9 567 74.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 6.6e-254 880.6 565 74.0
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.1e-253 879.8 566 74.6
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.5e-253 879.4 565 73.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.9e-253 879.0 565 74.3
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.3e-253 878.2 549 75.2
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.3e-253 878.2 563 74.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.6e-253 877.5 567 73.0
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 5.6e-253 877.5 565 73.6
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 5.6e-253 877.5 564 73.9
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.6e-253 877.5 566 74.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 7.3e-253 877.1 565 74.2
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 7.3e-253 877.1 563 74.4
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 9.6e-253 876.7 557 75.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.6e-253 876.7 562 74.9
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.6e-252 875.9 566 73.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-252 875.5 564 73.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.8e-252 875.2 563 74.2
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.6e-252 874.8 561 74.3
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 8.1e-252 873.6 563 74.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.1e-252 873.6 564 72.9
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-251 873.2 568 73.4
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.1e-251 873.2 562 73.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.4e-251 872.8 567 72.8
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.4e-251 872.8 565 73.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.9e-251 870.5 564 73.4
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 9.0e-251 870.2 568 73.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.0e-250 869.0 549 74.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.6e-250 868.6 565 72.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 7.6e-250 867.1 565 72.7
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 9.9e-250 866.7 564 73.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.3e-249 866.3 564 73.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-249 866.3 564 73.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.7e-249 865.9 564 73.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.7e-249 865.9 565 72.2
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-249 865.5 564 73.6
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-249 865.5 564 73.6
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-249 865.5 564 73.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.2e-249 865.5 564 73.2
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.2e-249 865.5 556 73.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.4e-249 863.6 562 73.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.1e-248 863.2 564 72.7
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.9e-248 862.4 564 73.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.2e-248 861.3 561 73.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 7.1e-248 860.5 564 72.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 9.3e-248 860.1 564 72.5
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.7e-247 858.6 562 72.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.7e-247 858.6 564 71.5
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 4.6e-247 857.8 562 72.4
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.6e-247 857.8 562 72.8
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-247 857.4 564 73.0
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.3e-246 856.3 567 72.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-246 855.9 564 72.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.8e-246 855.9 549 73.6
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 3.0e-246 855.1 562 72.1
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.1e-246 854.4 551 72.6
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-245 853.2 564 72.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-245 852.8 564 72.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-245 852.8 564 72.5
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.3e-245 851.3 549 73.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.6e-245 850.1 567 72.3
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.6e-245 850.1 564 70.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-244 849.7 564 70.7
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.1e-244 849.0 550 72.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 8.1e-244 847.0 569 71.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-242 843.2 567 72.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.6e-242 842.0 567 72.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 4.5e-242 841.3 561 71.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.3e-241 839.7 565 69.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.7e-241 839.3 533 73.9
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 7.9e-239 830.5 565 68.7
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 7.9e-239 830.5 565 70.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.0e-238 830.1 564 69.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.7e-238 827.0 566 69.4
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 9.0e-235 817.0 562 69.6
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.6e-234 815.5 565 68.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.2e-232 808.5 563 70.9
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.5e-232 807.7 559 68.3
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 9.3e-232 807.0 554 68.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-231 806.2 554 68.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-231 805.1 524 72.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.0e-230 803.5 559 68.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 5.7e-229 797.7 562 68.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 8.5e-225 783.9 572 65.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-221 771.9 566 66.1
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.2e-220 769.2 566 66.3
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 9.1e-219 763.8 550 66.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 9.7e-213 743.8 469 73.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.8e-204 715.7 557 65.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.4e-195 686.0 418 79.7
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.6e-185 651.4 425 72.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.8e-175 619.4 543 54.7
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-168 597.4 563 54.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.5e-168 596.3 565 54.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.2e-163 579.3 373 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.6e-162 577.0 502 53.8
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.3e-160 569.3 529 50.5
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.4e-147 527.3 418 59.3
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.8e-146 521.5 329 73.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.4e-139 500.7 417 61.2
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 7.1e-131 471.9 292 74.0
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 8.7e-121 438.3 304 68.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-109 400.2 565 41.4
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.7e-108 397.5 468 48.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.2e-107 393.3 564 41.1
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.5e-80 304.7 492 36.2
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.6e-74 283.5 213 64.8
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-70 270.8 548 33.6
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-55 221.9 150 67.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-55 221.5 150 67.3
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 3.3e-51 207.2 166 59.0
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.8e-45 186.0 133 68.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.3e-43 180.3 123 72.4
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 4.4e-40 170.2 164 58.5
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.9e-39 167.5 164 58.5
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-39 166.4 164 57.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.4e-38 163.3 117 66.7
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-37 162.2 164 57.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.5e-37 160.6 127 60.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.2e-32 145.6 358 29.1
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.1e-26 124.8 495 24.4
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 8.1e-26 122.9 87 64.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.9e-23 113.6 91 56.0
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-22 110.9 213 35.7
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-21 108.6 75 62.7
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 9.6e-19 99.4 164 41.5
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-17 95.1 184 37.5
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 9.0e-17 92.8 66 63.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-15 89.0 55 65.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.5e-08 63.9 46 56.5


User provided reference genes

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