Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.0e-102 376.7 186 100.0
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 1.3e-81 306.6 175 82.3
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 4.0e-75 285.0 173 76.3
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 6.5e-73 277.7 180 75.6
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 2.5e-61 239.2 170 65.3
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 2.5e-61 239.2 194 57.7
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 5.7e-61 238.0 170 67.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 9.7e-61 237.3 170 65.3
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.2e-60 236.1 196 60.2
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 2.8e-60 235.7 170 66.5
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 3.7e-60 235.3 168 63.1
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 4.8e-60 235.0 190 60.0
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 4.8e-60 235.0 163 65.6
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 6.3e-60 234.6 170 64.7
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 8.2e-60 234.2 190 60.0
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 8.2e-60 234.2 190 60.0
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 8.2e-60 234.2 190 60.0
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 8.2e-60 234.2 190 60.5
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 8.2e-60 234.2 191 59.7
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 1.1e-59 233.8 196 58.2
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.1e-59 233.8 191 60.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 1.1e-59 233.8 170 64.1
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.4e-59 233.4 190 60.0
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.4e-59 233.4 196 59.2
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.4e-59 233.4 169 63.9
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 63.5
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 62.4
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 64.1
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 64.1
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 64.1
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.8e-59 233.0 170 64.7
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 1.8e-59 233.0 191 59.2
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.8e-59 233.0 190 59.5
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.8e-59 233.0 171 64.3
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 2.4e-59 232.6 170 64.1
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 3.1e-59 232.3 190 60.0
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 3.1e-59 232.3 165 65.5
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 3.1e-59 232.3 165 64.8
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 3.1e-59 232.3 191 59.2
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 3.1e-59 232.3 191 59.2
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 4.1e-59 231.9 190 59.5
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 4.1e-59 231.9 190 59.5
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 4.1e-59 231.9 190 59.5
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 4.1e-59 231.9 170 64.1
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 4.1e-59 231.9 190 58.9
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 6.9e-59 231.1 191 60.2
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 6.9e-59 231.1 196 58.7
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 9.1e-59 230.7 186 60.2
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 9.1e-59 230.7 166 64.5
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 9.1e-59 230.7 190 58.9
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 9.1e-59 230.7 191 59.7
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 9.1e-59 230.7 166 63.3
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 9.1e-59 230.7 170 64.1
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 1.2e-58 230.3 190 58.4
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.2e-58 230.3 190 58.4
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.5e-58 229.9 170 63.5
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.5e-58 229.9 190 58.9
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 2.0e-58 229.6 190 59.5
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 2.0e-58 229.6 170 64.7
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 2.6e-58 229.2 164 65.2
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.6e-58 229.2 170 62.9
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.6e-58 229.2 191 59.7
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 3.4e-58 228.8 164 65.9
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 3.4e-58 228.8 170 62.9
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 3.4e-58 228.8 191 59.2
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 4.5e-58 228.4 191 58.6
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 4.5e-58 228.4 191 58.6
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 4.5e-58 228.4 170 62.9
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 5.9e-58 228.0 191 59.7
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 7.7e-58 227.6 170 62.9
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 7.7e-58 227.6 170 61.2
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.0e-57 227.3 159 64.2
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.0e-57 227.3 189 58.2
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.7e-57 226.5 191 58.1
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 1.7e-57 226.5 170 62.4
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.7e-57 226.5 191 58.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.7e-57 226.5 170 63.5
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 2.2e-57 226.1 170 60.6
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 2.2e-57 226.1 170 62.9
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 2.9e-57 225.7 170 62.4
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 3.8e-57 225.3 191 58.1
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 3.8e-57 225.3 191 58.1
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 5.0e-57 224.9 170 62.4
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 6.5e-57 224.6 190 57.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 1.9e-56 223.0 196 57.7
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 2.5e-56 222.6 165 64.2
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 5.5e-56 221.5 170 61.2
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 5.5e-56 221.5 170 61.2
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 7.2e-56 221.1 170 59.4
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.1e-55 218.0 190 57.4
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 1.8e-54 216.5 184 56.5
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 5.1e-54 214.9 188 56.4
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 8.8e-54 214.2 141 69.5
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.6e-53 212.6 170 59.4
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 3.3e-53 212.2 230 50.0
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.7e-53 211.5 181 58.0
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.3e-52 210.3 196 55.6
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 6.3e-52 208.0 169 61.5
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.2e-52 207.6 167 60.5
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 8.2e-52 207.6 224 49.1
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 5.3e-51 204.9 166 59.0
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 5.0e-49 198.4 191 53.9
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.2e-47 193.7 170 55.9
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 4.7e-47 191.8 136 65.4
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 1.8e-46 189.9 136 64.7
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 3.9e-46 188.7 123 70.7
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.4e-45 184.5 159 58.5
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 9.7e-45 184.1 149 59.7
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.7e-44 183.3 157 58.0
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.2e-44 183.0 134 62.7
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.0e-41 174.1 164 51.8
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 3.8e-41 172.2 168 54.2
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 1.1e-40 170.6 145 53.1
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 1.2e-39 167.2 120 65.0
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.6e-39 166.8 133 60.9
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 6.7e-38 161.4 134 59.0
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.0e-37 159.8 213 44.1
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.7e-33 146.7 112 58.9
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.2e-32 142.5 167 47.3
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.2e-31 140.6 190 43.7
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.5e-18 95.9 174 39.1
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.6e-17 91.7 72 56.9
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.5e-16 90.5 104 45.2
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.4e-14 84.0 139 38.8
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.7e-12 77.0 52 61.5
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.7e-12 77.0 53 66.0
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.7e-10 69.7 102 41.2
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.8e-10 68.2 51 54.9
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.6e-07 60.5 108 36.1
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.8e-06 57.0 38 60.5
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.1e-06 56.2 143 28.0


User provided reference genes

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