Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 1.5e-184 649.4 333 100.0
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.5e-88 330.5 272 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 6.5e-84 315.1 200 74.0
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 1.5e-72 277.3 203 66.0
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 2.7e-69 266.5 230 58.3
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 1.1e-67 261.2 236 57.6
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.1e-67 261.2 223 60.5
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.5e-67 260.0 232 58.6
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 4.3e-67 259.2 234 56.8
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 7.3e-67 258.5 236 56.8
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 7.3e-67 258.5 229 59.4
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 9.5e-67 258.1 230 58.3
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.2e-66 257.7 232 58.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.1e-66 256.9 219 59.4
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.8e-66 256.5 239 54.8
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 2.8e-66 256.5 232 58.2
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 2.8e-66 256.5 236 56.4
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 2.8e-66 256.5 232 57.3
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 4.7e-66 255.8 232 56.9
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 4.7e-66 255.8 231 56.7
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 6.1e-66 255.4 234 55.6
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 6.1e-66 255.4 206 60.7
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 6.1e-66 255.4 230 57.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 8.0e-66 255.0 230 58.3
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 8.0e-66 255.0 208 62.0
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 8.0e-66 255.0 230 56.1
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 8.0e-66 255.0 225 56.4
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.0e-65 254.6 226 57.5
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.4e-65 254.2 230 56.1
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 1.4e-65 254.2 230 56.5
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.8e-65 253.8 225 57.8
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 1.8e-65 253.8 232 56.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 2.3e-65 253.4 230 56.5
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 2.3e-65 253.4 231 56.7
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 2.3e-65 253.4 223 57.8
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 3.1e-65 253.1 214 61.2
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 4.0e-65 252.7 207 59.9
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 4.0e-65 252.7 219 58.9
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.2e-65 252.3 243 54.3
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 6.8e-65 251.9 234 54.7
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 8.9e-65 251.5 234 56.8
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.2e-64 251.1 207 60.9
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.2e-64 251.1 231 56.7
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.6e-64 250.0 225 57.8
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.6e-64 250.0 221 58.4
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 2.6e-64 250.0 235 54.5
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 2.6e-64 250.0 206 60.2
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.4e-64 249.6 232 56.5
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 4.4e-64 249.2 230 56.1
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 5.8e-64 248.8 232 55.6
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 7.5e-64 248.4 264 51.1
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 9.8e-64 248.1 218 57.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 9.8e-64 248.1 250 52.0
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 9.8e-64 248.1 207 61.4
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 9.8e-64 248.1 231 56.3
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 9.8e-64 248.1 231 56.3
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.3e-63 247.7 225 54.7
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 1.7e-63 247.3 203 61.6
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.2e-63 246.9 234 57.3
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 2.2e-63 246.9 224 57.6
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.9e-63 246.5 235 56.2
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 4.9e-63 245.7 210 60.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 8.3e-63 245.0 208 60.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 8.3e-63 245.0 208 60.6
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 8.3e-63 245.0 225 58.2
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 1.1e-62 244.6 208 58.2
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.1e-62 244.6 208 58.2
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.1e-62 244.6 208 58.2
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 1.1e-62 244.6 208 58.2
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.4e-62 244.2 209 58.4
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.4e-62 244.2 230 56.1
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.9e-62 243.8 233 54.5
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.9e-62 243.8 209 58.9
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 2.4e-62 243.4 209 58.4
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 4.1e-62 242.7 209 58.4
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 4.1e-62 242.7 230 54.8
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 4.1e-62 242.7 230 54.8
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 5.4e-62 242.3 209 58.9
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.4e-62 242.3 259 51.7
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 5.4e-62 242.3 209 58.9
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 7.0e-62 241.9 271 48.7
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 9.2e-62 241.5 208 59.6
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 9.2e-62 241.5 232 54.3
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 1.6e-61 240.7 232 54.3
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.0e-61 240.4 230 53.0
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 2.0e-61 240.4 232 54.7
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 3.5e-61 239.6 200 59.0
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 4.6e-61 239.2 233 53.6
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.3e-60 237.7 244 51.2
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.8e-57 227.3 199 58.3
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 6.8e-57 225.3 260 49.6
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.2e-56 224.6 211 55.0
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 1.2e-56 224.6 222 55.9
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 2.6e-56 223.4 212 56.1
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.9e-55 219.2 209 54.5
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 1.1e-54 218.0 222 53.2
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.6e-53 214.2 201 56.2
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.6e-53 214.2 197 57.9
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 3.0e-52 209.9 216 52.3
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.8e-50 203.4 180 58.9
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 6.2e-50 202.2 180 56.7
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 2.3e-49 200.3 253 42.3
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.2e-48 198.0 174 57.5
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 3.4e-48 196.4 195 54.4
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 5.8e-48 195.7 172 58.1
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.9e-43 180.6 162 56.8
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 3.3e-43 179.9 206 44.7
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.9e-39 166.0 169 55.0
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 7.1e-38 162.2 150 54.7
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 8.7e-36 155.2 126 58.7
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.3e-34 151.4 155 49.7
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.3e-31 141.4 123 55.3
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 2.1e-26 124.0 120 50.0
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 2.3e-20 104.0 77 64.9
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 3.9e-20 103.2 86 60.5
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.6e-18 97.8 96 52.1
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 1.2e-16 91.7 65 66.2
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 3.0e-12 77.0 75 52.0


User provided reference genes

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