Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 4.3e-215 751.1 397 100.0
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 7.3e-74 282.0 376 48.4
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 7.6e-47 192.2 347 39.2
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 7.6e-47 192.2 386 37.6
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 3.0e-43 180.3 380 34.7
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 8.7e-43 178.7 376 38.0
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.1e-42 178.3 382 36.9
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 1.5e-42 177.9 376 34.8
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 1.5e-42 177.9 393 35.9
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 4.3e-42 176.4 384 35.9
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 9.6e-42 175.3 387 35.9
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 1.6e-41 174.5 373 35.9
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 2.8e-41 173.7 382 34.8
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 2.8e-41 173.7 378 36.5
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 3.7e-41 173.3 381 37.0
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 3.7e-41 173.3 383 35.8
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 4.8e-41 172.9 373 34.9
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 4.8e-41 172.9 379 36.7
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 6.2e-41 172.6 395 36.7
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 6.2e-41 172.6 371 36.4
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 1.1e-40 171.8 379 37.2
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.4e-40 171.4 374 37.2
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 1.8e-40 171.0 390 35.4
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 1.8e-40 171.0 378 35.4
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 4.1e-40 169.9 380 35.0
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 4.1e-40 169.9 390 35.1
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 5.3e-40 169.5 396 34.8
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 5.3e-40 169.5 376 35.1
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 5.3e-40 169.5 376 37.0
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 6.9e-40 169.1 380 35.3
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 6.9e-40 169.1 379 35.9
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 9.0e-40 168.7 375 36.0
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.2e-39 168.3 247 46.2
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 1.5e-39 167.9 387 36.7
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 2.0e-39 167.5 399 33.8
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 2.0e-39 167.5 383 35.8
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.0e-39 167.5 386 35.0
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 5.8e-39 166.0 398 35.9
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 5.8e-39 166.0 416 32.7
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 5.8e-39 166.0 383 35.0
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.0e-38 165.2 372 35.5
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 1.0e-38 165.2 392 33.7
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 3.8e-38 163.3 387 34.4
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 5.0e-38 162.9 380 34.5
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 5.0e-38 162.9 384 33.3
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 6.5e-38 162.5 375 33.9
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 6.5e-38 162.5 387 34.4
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 2.5e-37 160.6 381 34.1
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 7.1e-37 159.1 374 33.4
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 1.6e-36 157.9 375 34.9
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 2.1e-36 157.5 389 33.4
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 2.7e-36 157.1 383 32.6
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 2.7e-36 157.1 394 33.5
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 3.5e-36 156.8 386 35.5
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 4.6e-36 156.4 377 35.3
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 7.9e-36 155.6 392 32.9
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 1.0e-35 155.2 412 31.8
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.0e-35 155.2 371 34.2
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.0e-35 155.2 379 36.1
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.8e-35 154.5 378 35.4
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 3.0e-35 153.7 385 33.2
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 3.0e-35 153.7 375 33.6
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 5.1e-35 152.9 384 34.1
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 6.7e-35 152.5 380 33.2
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 1.9e-34 151.0 395 32.2
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.5e-34 150.6 394 33.8
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 9.7e-34 148.7 385 34.8
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 2.2e-33 147.5 381 33.3
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 7.7e-31 139.0 390 32.3
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.0e-30 138.7 245 40.0
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 2.2e-30 137.5 394 34.3
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 2.2e-30 137.5 378 33.1
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 1.1e-29 135.2 420 31.4
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 1.9e-29 134.4 379 31.1
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 7.2e-29 132.5 236 41.9
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.4e-27 128.3 285 34.7
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 1.4e-27 128.3 470 30.0
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 3.9e-27 126.7 288 34.7
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 5.1e-27 126.3 367 32.4
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 4.3e-26 123.2 287 33.1
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 5.7e-26 122.9 333 32.4
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 7.4e-26 122.5 337 32.0
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 9.7e-26 122.1 269 33.8
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.7e-25 121.3 244 38.9
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 5.3e-24 116.3 250 35.2
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.5e-23 114.8 384 28.1
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 2.0e-23 114.4 258 35.3
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 4.5e-23 113.2 236 33.9
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 4.5e-23 113.2 399 31.6
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 2.2e-22 110.9 248 35.5
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 3.8e-22 110.2 281 33.8
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 5.0e-22 109.8 197 38.1
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 2.5e-21 107.5 372 29.6
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 4.2e-21 106.7 232 36.2
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 7.2e-21 105.9 298 32.9
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 1.2e-20 105.1 251 34.7
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.9e-20 102.4 376 29.5
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 7.9e-20 102.4 155 40.6
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 1.8e-19 101.3 277 32.9
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 4.4e-18 96.7 316 29.4
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 5.7e-18 96.3 253 32.8
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 3.7e-17 93.6 281 32.4
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 8.2e-17 92.4 371 30.2
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 1.4e-16 91.7 243 33.7
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 9.1e-16 89.0 460 26.5
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 2.6e-15 87.4 200 38.0
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 2.2e-14 84.3 322 28.3
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 6.5e-14 82.8 208 31.7
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.2e-12 78.6 237 30.8
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 7.5e-10 69.3 144 32.6
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 9.1e-08 62.4 164 32.9
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 9.1e-08 62.4 164 32.9
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 2.6e-07 60.8 246 29.7
Cre08.g362850 Chlamydomonas reinhardtii HOM05D006712 ORTHO05D008219 3.8e-06 57.0 161 28.0
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 6.5e-06 56.2 171 30.4


User provided reference genes

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