Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 4.5e-197 691.0 342 100.0
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 4.7e-154 548.1 288 93.8
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.3e-135 486.9 272 87.1
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 1.4e-129 466.8 275 81.1
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 6.2e-114 414.8 272 73.5
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 1.1e-113 414.1 283 71.4
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 4.0e-113 412.1 286 69.9
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 1.2e-112 410.6 287 69.7
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 4.5e-112 408.7 287 67.6
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 7.6e-112 407.9 286 69.2
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 9.9e-112 407.5 287 68.6
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 1.7e-111 406.8 287 69.7
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.7e-111 406.8 286 69.9
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.7e-111 406.8 287 67.6
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.2e-111 406.4 272 71.0
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 2.9e-111 406.0 272 72.1
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.9e-111 406.0 287 68.6
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 3.8e-111 405.6 286 69.2
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 4.9e-111 405.2 272 71.0
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 8.4e-111 404.4 284 68.7
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 8.4e-111 404.4 286 68.9
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 1.1e-110 404.1 284 69.4
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.4e-110 403.7 284 70.4
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 1.4e-110 403.7 286 66.8
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 2.4e-110 402.9 286 68.9
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 4.2e-110 402.1 278 69.1
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 9.3e-110 401.0 233 82.8
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.6e-109 400.2 287 66.9
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.6e-109 400.2 287 66.9
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 1.6e-109 400.2 285 69.5
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.6e-109 400.2 272 69.9
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 2.1e-109 399.8 283 69.6
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 2.1e-109 399.8 303 66.0
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 2.7e-109 399.4 272 71.0
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 3.5e-109 399.1 272 70.6
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 3.5e-109 399.1 284 69.7
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 4.6e-109 398.7 287 67.2
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 4.6e-109 398.7 287 67.9
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 4.6e-109 398.7 272 69.9
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 4.6e-109 398.7 277 69.7
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 4.6e-109 398.7 272 69.9
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 4.6e-109 398.7 272 70.2
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 7.9e-109 397.9 282 68.4
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.9e-109 397.9 272 69.9
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 7.9e-109 397.9 278 68.3
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 1.3e-108 397.1 291 66.7
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 1.3e-108 397.1 277 69.3
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 2.3e-108 396.4 287 67.9
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 3.0e-108 396.0 280 68.9
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 5.1e-108 395.2 283 68.6
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 6.7e-108 394.8 288 66.7
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 1.1e-107 394.0 287 66.9
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 1.1e-107 394.0 291 66.3
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.1e-107 394.0 277 69.7
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.5e-107 393.7 286 67.1
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.5e-107 393.7 287 67.2
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 1.9e-107 393.3 294 67.0
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 2.5e-107 392.9 287 66.9
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 2.5e-107 392.9 287 66.9
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.5e-107 392.9 272 69.9
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 2.5e-107 392.9 285 69.5
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 2.5e-107 392.9 288 66.7
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.5e-107 392.9 272 69.9
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 3.3e-107 392.5 275 69.1
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 3.3e-107 392.5 289 66.8
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 4.3e-107 392.1 280 69.6
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.6e-107 391.7 272 69.5
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 7.4e-107 391.3 289 65.4
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 7.4e-107 391.3 287 67.2
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 7.4e-107 391.3 286 66.8
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 7.4e-107 391.3 271 68.6
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 9.6e-107 391.0 286 66.4
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 9.6e-107 391.0 286 67.8
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 1.3e-106 390.6 288 66.0
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.3e-106 390.6 287 66.2
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.3e-106 390.6 287 66.2
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 1.6e-106 390.2 288 67.0
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.6e-106 390.2 272 69.5
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 2.1e-106 389.8 288 65.6
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 3.7e-106 389.0 287 66.9
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 4.8e-106 388.7 286 65.7
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 6.2e-106 388.3 287 66.2
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 8.2e-106 387.9 284 66.2
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 8.2e-106 387.9 286 65.4
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 1.1e-105 387.5 289 65.7
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 1.1e-105 387.5 289 65.7
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 1.4e-105 387.1 284 66.2
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.8e-105 386.7 283 66.1
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 2.4e-105 386.3 290 65.9
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 2.4e-105 386.3 287 65.9
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 3.1e-105 386.0 287 66.6
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 3.1e-105 386.0 287 66.6
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 4.0e-105 385.6 290 65.9
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 4.0e-105 385.6 290 65.5
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 6.9e-105 384.8 287 65.5
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 9.0e-105 384.4 290 64.8
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 1.5e-104 383.6 283 66.4
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 2.0e-104 383.3 287 65.9
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 2.0e-104 383.3 327 61.8
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 2.6e-104 382.9 318 61.0
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 2.6e-104 382.9 283 66.1
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.4e-104 382.5 293 64.2
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.4e-104 382.5 293 64.2
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 3.4e-104 382.5 290 64.8
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 4.5e-104 382.1 283 67.5
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 5.8e-104 381.7 320 60.6
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 1.3e-103 380.6 287 65.2
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 1.3e-103 380.6 291 66.0
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.2e-103 379.8 301 62.5
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.2e-103 379.8 301 62.5
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 2.9e-103 379.4 316 62.0
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.9e-103 379.4 301 62.1
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 4.9e-103 378.6 300 63.3
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 6.5e-103 378.3 301 62.1
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 1.1e-102 377.5 316 61.7
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 1.9e-102 376.7 283 65.4
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.9e-102 376.7 286 65.4
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 2.5e-102 376.3 297 64.3
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 5.5e-102 375.2 298 63.8
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 7.1e-102 374.8 297 63.6
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 1.2e-101 374.0 272 65.8
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 2.7e-101 372.9 288 64.2
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.8e-100 370.2 330 58.8
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 1.5e-99 367.1 288 64.9
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 5.7e-99 365.2 288 61.8
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 3.7e-98 362.5 286 62.6
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 1.4e-97 360.5 261 67.0
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 1.4e-97 360.5 293 61.4
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 1.4e-97 360.5 300 60.0
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 1.5e-96 357.1 283 61.5
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 2.0e-96 356.7 285 60.0
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 3.4e-96 355.9 289 63.7
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 6.5e-95 351.7 284 63.0
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 6.5e-95 351.7 283 60.4
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 2.8e-90 336.3 315 57.1
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 3.7e-90 335.9 258 64.0
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 4.1e-89 332.4 390 48.2
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 2.6e-88 329.7 270 59.6
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 6.7e-84 315.1 311 55.0
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 9.7e-83 311.2 329 51.7
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.7e-82 310.5 322 53.1
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.1e-81 305.8 283 55.5
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 9.1e-81 304.7 269 55.4
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 9.7e-75 284.6 271 52.4
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 6.3e-74 282.0 176 76.7
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 5.9e-72 275.4 291 50.9
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 3.8e-71 272.7 287 53.0
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.1e-70 271.2 259 54.1
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 2.2e-66 256.9 165 73.9
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 4.2e-54 216.1 276 43.5
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 1.0e-47 194.9 157 61.1
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-47 192.2 265 44.5
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.1e-46 191.4 287 41.1
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 1.3e-42 177.9 339 34.5
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 3.0e-39 166.8 132 59.1
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.9e-38 164.1 165 53.3
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 1.8e-36 157.5 306 34.3
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 4.1e-33 146.4 99 67.7
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 3.5e-32 143.3 126 55.6
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.5e-30 137.9 98 67.3
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 2.3e-28 130.6 267 31.5
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 2.3e-28 130.6 298 31.9
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.0e-27 127.5 269 33.1
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.2e-26 124.0 115 52.2
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.9e-26 123.6 105 55.2
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 1.1e-25 121.7 91 60.4
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 1.1e-17 95.1 257 30.7
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.2e-17 93.6 125 38.4
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 2.1e-16 90.9 82 53.7
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 3.5e-16 90.1 210 30.0
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 1.0e-15 88.6 98 46.9
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 3.3e-14 83.6 75 54.7
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 1.2e-11 75.1 80 51.2
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 1.5e-11 74.7 80 51.2
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 3.2e-09 67.0 80 50.0
AT3G12850 Arabidopsis thaliana HOM05D061468 ORTHO05D038599 3.9e-07 60.1 214 28.0
CAN.G80.2 Capsicum annuum HOM05D001349 ORTHO05D024033 4.3e-06 56.6 51 58.8


User provided reference genes

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