Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 0.0e+00 1702.2 928 100.0
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 0.0e+00 1702.2 928 100.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 5.7e-45 187.2 599 32.9
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 8.9e-38 163.3 617 31.3
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 2.9e-36 158.3 625 30.4
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 1.5e-32 146.0 785 28.2
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 4.3e-32 144.4 583 30.9
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 7.3e-32 143.7 855 26.8
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 8.0e-31 140.2 725 26.5
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.2e-29 136.3 667 26.5
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 7.5e-29 133.7 617 28.4
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.2e-28 132.1 640 28.9
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 4.9e-28 131.0 578 27.5
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 8.3e-28 130.2 690 26.8
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 1.9e-27 129.0 580 27.9
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 3.2e-27 128.3 628 27.5
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 7.0e-27 127.1 738 28.6
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 9.2e-27 126.7 579 27.6
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.2e-26 126.3 752 27.4
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 2.7e-26 125.2 819 26.7
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.7e-26 125.2 600 26.8
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 4.6e-26 124.4 581 26.5
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 1.7e-25 122.5 576 28.5
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 8.6e-25 120.2 577 27.9
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 8.6e-25 120.2 614 25.9
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 1.1e-24 119.8 639 27.7
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.1e-24 119.8 741 27.3
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 2.5e-24 118.6 693 25.8
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 2.5e-24 118.6 585 28.0
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 3.3e-24 118.2 585 26.7
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 4.3e-24 117.9 618 26.5
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 7.3e-24 117.1 807 25.9
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 7.3e-24 117.1 616 28.6
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 9.5e-24 116.7 619 27.0
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.2e-23 116.3 579 28.8
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 1.6e-23 115.9 627 26.6
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.6e-23 115.9 630 27.5
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 1.6e-23 115.9 817 26.7
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 3.6e-23 114.8 814 27.0
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 3.6e-23 114.8 607 26.7
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 4.7e-23 114.4 598 30.4
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 8.1e-23 113.6 646 26.6
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.8e-22 112.5 765 25.6
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 4.0e-22 111.3 602 28.1
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 7.5e-21 107.1 722 26.0
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 9.8e-21 106.7 861 26.2
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 1.7e-20 105.9 587 26.9
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 1.7e-20 105.9 591 27.4
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 2.2e-20 105.5 578 26.6
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 3.7e-20 104.8 622 25.4
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 1.4e-19 102.8 611 25.7
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 4.1e-19 101.3 808 26.5
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 3.5e-18 98.2 602 27.1
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 4.6e-18 97.8 640 25.6
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 6.0e-18 97.4 600 26.0
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 7.8e-18 97.1 727 24.8
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 1.3e-17 96.3 578 27.9
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 2.3e-17 95.5 779 26.6
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 3.0e-17 95.1 614 26.1
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 3.0e-17 95.1 436 29.1
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 5.1e-17 94.4 551 29.0
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 5.1e-17 94.4 582 27.0
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 8.6e-17 93.6 672 26.3
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 8.6e-17 93.6 599 26.5
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 2.5e-16 92.0 566 26.9
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 2.5e-16 92.0 755 25.2
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 3.3e-16 91.7 667 27.7
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 7.3e-16 90.5 432 29.6
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 9.5e-16 90.1 525 26.9
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.2e-15 89.7 577 26.2
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 4.7e-15 87.8 735 26.0
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 6.2e-15 87.4 674 25.7
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 8.1e-15 87.0 579 25.7
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.1e-14 86.7 666 25.8
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 1.1e-14 86.7 514 26.3
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.1e-14 86.7 598 25.8
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.8e-14 85.9 610 25.7
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 5.2e-14 84.3 649 23.9
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 5.2e-14 84.3 721 24.7
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 6.8e-14 84.0 594 25.1
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 8.9e-14 83.6 688 25.9
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 8.9e-14 83.6 688 25.9
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 8.9e-14 83.6 612 25.5
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 2.6e-13 82.0 577 26.7
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.3e-12 79.7 577 26.9
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 2.2e-12 79.0 530 25.1
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 2.9e-12 78.6 708 25.3
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 4.9e-12 77.8 544 24.3
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.1e-11 76.6 344 27.9
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 7.1e-11 73.9 664 23.9
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 2.7e-10 72.0 615 25.2
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 3.5e-10 71.6 211 33.6
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 3.5e-10 71.6 673 25.0
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 3.5e-10 71.6 815 25.5
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 4.6e-10 71.2 776 24.7
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 7.8e-10 70.5 353 27.2
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 2.3e-09 68.9 740 24.5
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.3e-09 68.9 549 27.0
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.3e-09 68.9 549 27.0
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 3.0e-09 68.6 620 23.9
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 3.6e-07 61.6 640 24.2
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 8.1e-07 60.5 446 24.4
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.8e-06 59.3 354 26.3
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 2.4e-06 58.9 761 23.7


User provided reference genes

Program Settings