Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_5310 Physcomitrium patens HOM05D000735 ORTHO05D004669 5.5e-87 324.3 170 100.0
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 8.3e-43 177.6 181 54.7
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 2.7e-33 146.0 188 46.8
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 8.9e-29 131.0 192 43.8
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 2.0e-28 129.8 194 44.8
Cre13.g589800 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 3.4e-28 129.0 193 42.5
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 4.4e-28 128.6 178 47.8
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 4.4e-28 128.6 197 41.6
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 1.3e-27 127.1 161 48.4
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 6.4e-27 124.8 158 48.1
Cre16.g671250 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 1.1e-26 124.0 188 44.1
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 1.9e-26 123.2 189 43.4
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.2e-25 120.6 181 43.1
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.6e-25 120.2 181 43.6
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 1.6e-25 120.2 181 43.1
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 1.6e-25 120.2 181 43.1
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 1.6e-25 120.2 181 43.6
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.6e-25 120.2 183 43.7
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 1.6e-25 120.2 149 50.3
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 2.1e-25 119.8 164 47.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.1e-25 119.8 180 43.9
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 2.1e-25 119.8 181 43.1
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.7e-25 119.4 155 47.1
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 4.6e-25 118.6 181 44.2
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 6.0e-25 118.2 187 41.7
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 6.0e-25 118.2 181 43.6
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 6.0e-25 118.2 156 45.5
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 1.0e-24 117.5 181 42.5
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.0e-24 117.5 179 43.0
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 1.3e-24 117.1 181 44.2
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 1.3e-24 117.1 181 43.1
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.7e-24 116.7 181 43.1
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.7e-24 116.7 185 42.2
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.7e-24 116.7 191 42.4
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.7e-24 116.7 191 42.4
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.7e-24 116.7 191 42.4
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 1.7e-24 116.7 194 39.2
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 1.7e-24 116.7 181 43.1
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 2.3e-24 116.3 196 41.3
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 2.3e-24 116.3 191 42.4
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 3.0e-24 115.9 181 43.1
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.9e-24 115.5 187 41.2
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 3.9e-24 115.5 187 41.2
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 3.9e-24 115.5 181 43.6
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 5.1e-24 115.2 179 43.6
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 5.1e-24 115.2 156 46.2
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 5.1e-24 115.2 178 43.3
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 6.6e-24 114.8 180 42.8
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 8.6e-24 114.4 180 42.2
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 8.6e-24 114.4 189 40.7
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 8.6e-24 114.4 165 44.8
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 1.1e-23 114.0 179 43.6
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 1.1e-23 114.0 183 43.2
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 1.1e-23 114.0 172 43.6
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 1.1e-23 114.0 172 43.6
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 1.5e-23 113.6 181 42.0
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 1.5e-23 113.6 181 42.5
Cre02.g144550 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 1.5e-23 113.6 142 50.0
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.5e-23 113.6 184 40.8
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 2.5e-23 112.8 181 40.3
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 2.5e-23 112.8 183 42.1
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 3.3e-23 112.5 181 40.3
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 3.3e-23 112.5 193 39.9
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 4.3e-23 112.1 189 39.7
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 5.6e-23 111.7 182 40.1
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 5.6e-23 111.7 181 42.5
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 5.6e-23 111.7 181 41.4
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 5.6e-23 111.7 194 41.2
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 5.6e-23 111.7 194 41.2
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 7.3e-23 111.3 181 39.8
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 7.3e-23 111.3 151 45.7
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 7.3e-23 111.3 181 39.8
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 7.3e-23 111.3 180 40.6
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 7.3e-23 111.3 185 40.5
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 9.6e-23 110.9 195 41.0
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 9.6e-23 110.9 188 42.0
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 9.6e-23 110.9 188 42.0
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 9.6e-23 110.9 180 42.2
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 1.2e-22 110.5 186 41.4
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 1.6e-22 110.2 181 41.4
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 1.6e-22 110.2 203 39.4
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.1e-22 109.8 175 42.3
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.1e-22 109.8 155 45.2
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 2.1e-22 109.8 188 39.9
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 2.8e-22 109.4 181 39.2
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 2.8e-22 109.4 181 40.9
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 3.6e-22 109.0 195 37.9
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 3.6e-22 109.0 183 42.1
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 3.6e-22 109.0 181 41.4
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 4.7e-22 108.6 193 38.9
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 4.7e-22 108.6 191 40.8
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 6.2e-22 108.2 183 39.3
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 6.2e-22 108.2 188 41.0
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.1e-21 107.5 188 39.4
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 1.1e-21 107.5 191 38.2
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 1.1e-21 107.5 203 38.9
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.4e-21 107.1 188 39.9
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 1.4e-21 107.1 191 37.7
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 1.4e-21 107.1 191 37.7
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 6.9e-21 104.8 189 40.2
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 8.9e-21 104.4 193 37.3
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 1.5e-20 103.6 225 36.4
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 1.5e-20 103.6 203 36.0
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 2.0e-20 103.2 192 38.0
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 2.6e-20 102.8 205 38.0
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 4.4e-20 102.1 200 35.0
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 9.9e-20 100.9 233 36.1
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.7e-19 100.1 218 35.3
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 3.8e-19 99.0 203 36.5
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 1.9e-18 96.7 87 62.1
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 2.4e-18 96.3 190 38.9
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 3.2e-18 95.9 87 62.1
Lalb_Chr20g0119791 Lupinus albus HOM05D000735 ORTHO05D004669 4.2e-18 95.5 87 60.9
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 4.2e-18 95.5 87 60.9
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 5.4e-18 95.1 154 42.9
Lalb_Chr18g0057601 Lupinus albus HOM05D000735 ORTHO05D004669 5.4e-18 95.1 87 60.9
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 1.2e-17 94.0 86 61.6
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 1.6e-17 93.6 87 59.8
MCO01G278 Micromonas commoda HOM05D000735 ORTHO05D004669 3.5e-17 92.4 206 32.0
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 6.0e-17 91.7 87 58.6
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 3.9e-16 89.0 192 33.9
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 8.7e-16 87.8 140 43.6
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.5e-15 87.0 172 37.2
Cfa024656 Carpinus fangiana HOM05D000735 ORTHO05D004669 1.1e-13 80.9 89 49.4
PRCOL_00005087 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 1.8e-13 80.1 87 49.4
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 2.2e-11 73.2 253 29.6
CBR_g4705 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-11 72.4 54 72.2
SEGI_21103 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 4.9e-11 72.0 65 64.6
Pp3c3_15950 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.6e-09 67.0 174 35.1
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 2.1e-09 66.6 65 60.0
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 3.5e-09 65.9 51 66.7
CBR_g31696 Chara braunii HOM05D000735 ORTHO05D000838 4.6e-09 65.5 172 32.0
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.9e-07 60.1 136 36.0
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 2.5e-07 59.7 142 34.5
Sopen04g025520 Solanum pennellii HOM05D000735 ORTHO05D004669 7.4e-07 58.2 41 73.2
SMO134G0160 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 6.2e-06 55.1 89 42.7


User provided reference genes

Program Settings