Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 3.1e-182 641.7 338 100.0
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.7e-87 327.0 310 59.4
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 9.9e-72 274.6 299 48.8
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 4.9e-71 272.3 299 48.5
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 4.9e-71 272.3 299 48.5
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 8.4e-71 271.6 299 48.5
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 8.4e-71 271.6 299 48.5
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 8.4e-71 271.6 299 48.5
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.4e-70 270.8 268 51.5
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.9e-70 270.4 268 51.1
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 2.4e-70 270.0 299 47.5
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 2.4e-70 270.0 299 47.5
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 7.1e-70 268.5 299 48.2
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 9.3e-70 268.1 299 47.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 9.3e-70 268.1 274 49.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.2e-69 267.7 295 48.8
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.7e-69 266.5 275 51.6
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.7e-69 266.5 299 47.5
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.5e-69 266.2 273 48.7
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 3.5e-69 266.2 268 50.7
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 4.6e-69 265.8 302 48.0
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 6.0e-69 265.4 290 47.6
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 6.0e-69 265.4 290 47.6
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 6.0e-69 265.4 274 49.3
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 6.0e-69 265.4 274 49.3
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.8e-68 263.8 302 46.7
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.9e-68 262.7 306 47.7
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 3.9e-68 262.7 302 45.7
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.1e-68 262.3 274 48.9
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 5.1e-68 262.3 302 46.4
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 6.7e-68 261.9 271 49.4
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.1e-67 261.2 315 44.4
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.5e-67 260.8 302 46.4
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.5e-67 260.8 303 47.2
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.5e-67 260.8 274 48.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.9e-67 260.4 274 49.6
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 3.3e-67 259.6 273 49.5
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.3e-67 259.2 303 47.9
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.3e-66 257.7 303 45.2
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.6e-66 257.3 268 48.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.1e-66 256.9 293 46.8
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.1e-66 256.9 274 47.8
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 2.1e-66 256.9 274 48.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 2.1e-66 256.9 302 45.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 2.1e-66 256.9 270 48.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.1e-66 256.9 273 48.4
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.8e-66 256.5 315 46.0
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 3.7e-66 256.1 309 43.7
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 6.2e-66 255.4 271 49.8
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 6.2e-66 255.4 271 48.3
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.2e-66 255.4 273 48.0
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 8.2e-66 255.0 269 48.7
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 8.2e-66 255.0 274 47.4
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.1e-65 254.6 274 48.5
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.4e-65 254.2 274 46.7
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.4e-65 254.2 269 48.7
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.4e-65 254.2 274 47.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.4e-65 254.2 302 45.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.4e-65 254.2 271 47.2
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.4e-65 254.2 273 47.6
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 2.4e-65 253.4 306 45.4
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.4e-65 253.4 273 49.1
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.4e-65 253.4 299 46.2
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.1e-65 253.1 261 51.3
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.1e-65 253.1 289 48.1
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 3.1e-65 253.1 303 45.9
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 4.0e-65 252.7 273 45.4
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.0e-65 252.7 269 48.3
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.0e-65 252.7 273 48.4
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 5.3e-65 252.3 263 51.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 6.9e-65 251.9 308 47.1
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.9e-65 251.9 273 48.4
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 6.9e-65 251.9 306 45.8
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 9.0e-65 251.5 303 46.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 9.0e-65 251.5 262 50.0
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.2e-64 251.1 304 45.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-64 251.1 289 45.7
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.2e-64 251.1 289 45.7
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.2e-64 251.1 303 44.2
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.6e-64 250.0 271 48.3
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 4.5e-64 249.2 303 46.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 4.5e-64 249.2 288 47.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.8e-64 248.8 273 48.0
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 5.8e-64 248.8 272 47.8
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 7.6e-64 248.4 273 46.2
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.0e-63 248.1 305 46.6
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.7e-63 247.3 313 44.1
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.2e-63 246.9 324 43.2
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.9e-63 246.5 302 45.7
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 8.4e-63 245.0 303 44.9
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.4e-62 244.2 311 44.4
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.5e-62 243.4 275 47.6
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.2e-62 243.0 245 50.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.2e-62 243.0 266 47.0
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 5.5e-62 242.3 247 51.0
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.2e-61 241.1 351 39.0
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.6e-61 240.7 303 43.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.8e-60 237.3 302 46.4
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 5.1e-60 235.7 271 46.1
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 8.7e-60 235.0 279 46.6
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.3e-58 231.1 372 38.7
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.2e-55 220.3 319 39.8
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.0e-55 219.2 301 42.5
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.5e-54 216.9 412 35.2
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.2e-53 214.5 300 40.7
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.0e-52 211.5 293 43.7
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-52 210.7 299 42.5
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 6.7e-52 208.8 287 43.2
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.2e-50 201.8 255 44.3
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.8e-49 200.7 349 41.0
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 9.1e-49 198.4 254 44.1
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 4.4e-43 179.5 195 45.1
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 1.4e-41 174.5 207 45.9
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.8e-41 174.1 225 45.3
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.1e-41 172.9 286 39.5
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 4.1e-41 172.9 195 43.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.9e-38 164.1 303 37.6
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.2e-38 163.3 279 40.5
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.1e-37 159.1 177 44.1
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.4e-36 157.9 327 37.3
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.3e-36 157.1 237 38.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.1e-35 154.8 232 40.9
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.0e-35 154.1 174 43.7
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.2e-34 150.6 239 37.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.2e-34 150.6 176 45.5
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.4e-33 147.1 290 36.6
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.6e-32 144.4 228 40.8
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.5e-30 137.9 315 32.1
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 8.8e-28 128.6 109 56.0
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.1e-25 121.7 114 56.1
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.1e-25 119.8 107 53.3
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 7.0e-25 119.0 117 52.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 5.2e-20 102.8 164 32.9
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.4e-19 100.1 93 52.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-18 97.8 124 46.0
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.1e-17 95.1 99 48.5
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.7e-15 87.8 74 62.2
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 7.0e-09 65.9 90 42.2


User provided reference genes

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