Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.6e-299 1029.6 486 100.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 9.3e-188 660.6 475 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 5.8e-182 641.3 422 69.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 9.6e-169 597.4 431 63.6
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 9.6e-169 597.4 469 59.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.6e-168 596.7 471 59.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.8e-168 595.1 461 60.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 5.3e-167 591.7 463 60.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 6.9e-167 591.3 443 61.9
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 6.9e-167 591.3 443 61.2
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.0e-166 589.7 449 60.6
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 5.8e-166 588.2 465 59.1
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.7e-165 586.6 440 61.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 4.9e-165 585.1 467 58.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 6.5e-165 584.7 440 61.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 6.5e-165 584.7 470 58.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 6.5e-165 584.7 464 59.3
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.4e-164 583.6 428 62.1
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.4e-164 583.6 432 62.0
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.9e-164 583.2 428 62.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.9e-164 583.2 471 58.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.5e-164 582.8 428 61.4
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.5e-164 582.8 469 58.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 3.2e-164 582.4 484 57.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.2e-164 582.0 428 61.9
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 4.2e-164 582.0 451 59.2
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 7.1e-164 581.3 451 59.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 7.1e-164 581.3 455 59.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 7.1e-164 581.3 455 59.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 7.1e-164 581.3 465 59.1
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 7.1e-164 581.3 427 62.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-163 580.5 428 62.4
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.2e-163 580.5 470 58.1
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.7e-163 579.3 470 58.3
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.5e-163 578.9 450 59.6
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.6e-163 578.6 470 58.1
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 7.9e-163 577.8 463 59.2
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.0e-162 577.4 465 57.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.8e-162 576.6 427 61.1
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.3e-162 576.2 440 60.0
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.9e-162 575.5 427 60.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 6.7e-162 574.7 440 59.5
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 6.7e-162 574.7 428 60.7
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 6.7e-162 574.7 469 56.3
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 8.7e-162 574.3 455 58.9
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 8.7e-162 574.3 457 59.1
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.9e-161 573.2 443 60.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.5e-161 572.8 427 61.1
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 2.5e-161 572.8 436 60.1
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 4.3e-161 572.0 437 59.7
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 4.3e-161 572.0 457 58.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 5.7e-161 571.6 431 60.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.1e-159 565.8 439 59.5
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.1e-159 565.5 458 58.1
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.1e-159 565.5 458 57.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 4.1e-159 565.5 433 59.8
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 5.3e-159 565.1 427 60.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 6.9e-159 564.7 449 59.2
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 9.0e-159 564.3 437 60.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.0e-159 564.3 428 59.6
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 9.0e-159 564.3 428 59.8
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.2e-158 563.9 429 61.3
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.0e-158 563.1 458 57.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.5e-158 562.0 449 58.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 4.5e-158 562.0 439 58.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 7.6e-158 561.2 400 63.8
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.3e-157 560.5 439 57.6
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.2e-157 559.7 439 58.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.9e-157 559.3 451 58.8
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 5.0e-157 558.5 464 56.7
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.0e-157 558.5 409 62.1
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 5.0e-157 558.5 433 59.1
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 6.5e-157 558.1 432 60.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 6.5e-157 558.1 427 58.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.1e-156 557.4 467 56.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.9e-156 556.6 449 58.6
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.2e-156 555.8 435 58.2
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 4.2e-156 555.4 432 60.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.5e-156 555.1 428 59.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 9.3e-156 554.3 463 55.7
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 2.7e-155 552.7 481 54.5
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.7e-155 552.7 461 56.0
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 4.6e-155 552.0 471 55.4
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 7.9e-155 551.2 429 59.4
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 7.9e-155 551.2 461 56.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.9e-155 551.2 479 54.7
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.3e-154 550.4 461 56.6
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.1e-153 547.4 480 55.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.9e-153 546.6 462 56.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.9e-153 546.6 462 56.7
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.8e-152 542.7 438 57.1
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 8.2e-152 541.2 456 57.2
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.2e-150 537.3 434 55.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.5e-150 537.0 434 58.1
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.4e-150 535.8 477 55.1
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 7.2e-148 528.1 561 47.2
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.4e-145 518.1 473 53.3
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 8.2e-144 514.6 425 58.6
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.8e-143 513.5 506 50.4
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.5e-142 510.4 428 55.6
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 2.2e-141 506.5 352 65.6
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 5.0e-141 505.4 458 55.0
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 4.2e-140 502.3 405 57.3
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 7.2e-140 501.5 363 63.6
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.7e-139 499.6 462 54.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.4e-138 497.3 440 55.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 8.8e-138 494.6 382 59.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-134 483.8 384 58.1
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-134 483.8 384 58.1
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.2e-130 468.8 346 59.8
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 8.2e-128 461.5 384 56.8
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.1e-127 461.1 427 51.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.8e-125 452.6 325 61.5
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.5e-116 424.1 433 49.7
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.9e-116 423.7 320 59.1
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 2.8e-112 409.8 452 46.2
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.4e-111 406.8 412 49.8
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.5e-108 397.5 522 41.2
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.6e-108 395.6 434 47.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 8.0e-99 365.2 270 59.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.2e-95 351.7 260 61.9
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.3e-77 294.7 430 40.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-73 281.2 218 56.9
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.8e-56 223.4 184 57.1
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.5e-55 219.5 166 62.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.9e-52 211.1 110 78.2
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.6e-46 189.9 364 32.4
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.1e-42 178.7 148 54.1
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.1e-42 176.8 148 55.4
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.7e-36 155.6 129 59.7
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 4.1e-34 150.2 145 54.5
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.6e-28 131.0 159 45.9
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.0e-26 122.9 118 50.8
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 9.4e-23 112.5 109 51.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 4.4e-20 103.6 188 36.2
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 4.8e-19 100.1 189 36.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.3e-18 96.7 68 60.3
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.5e-09 67.4 60 48.3


User provided reference genes

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