Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.7e-109 398.7 201 100.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.9e-55 219.2 187 58.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.5e-46 190.3 172 55.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.3e-44 183.0 199 53.8
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.2e-44 181.8 196 54.1
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.9e-44 181.0 198 54.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.5e-43 180.3 195 51.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.0e-43 179.9 181 51.4
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.5e-43 177.9 176 54.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 9.8e-43 177.6 185 53.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.3e-42 177.2 172 53.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.7e-42 176.8 199 50.3
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.7e-42 176.8 185 51.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.7e-42 176.8 169 55.0
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.7e-42 176.8 169 55.0
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.7e-42 176.8 169 55.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.2e-42 176.4 175 54.3
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-42 176.4 182 53.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.9e-42 176.0 181 51.9
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.9e-42 176.0 176 52.8
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.9e-42 175.3 197 50.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 4.9e-42 175.3 177 53.1
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 4.9e-42 175.3 182 53.8
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 4.9e-42 175.3 151 59.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 8.3e-42 174.5 175 56.0
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-41 174.1 181 53.0
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.4e-41 173.7 162 54.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.4e-41 172.9 174 52.3
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.2e-41 172.6 178 51.1
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 4.1e-41 172.2 166 56.6
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 4.1e-41 172.2 185 51.9
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.4e-41 171.8 179 53.6
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 5.4e-41 171.8 178 53.9
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.4e-41 171.8 169 53.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 5.4e-41 171.8 181 50.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 7.0e-41 171.4 178 51.1
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 9.2e-41 171.0 178 51.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-40 170.6 167 57.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-40 170.6 163 56.4
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.6e-40 170.2 186 51.1
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.6e-40 170.2 197 49.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.6e-40 170.2 143 60.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.6e-40 170.2 164 54.3
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.6e-40 170.2 183 51.4
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 2.1e-40 169.9 182 53.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.7e-40 169.5 195 48.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.7e-40 169.5 177 51.4
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.7e-40 169.5 161 57.1
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.5e-40 169.1 142 60.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 6.0e-40 168.3 179 50.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.0e-39 167.5 178 50.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.3e-39 167.2 191 50.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.7e-39 166.8 183 51.4
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.3e-39 166.4 143 58.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.3e-39 166.4 179 50.8
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.3e-39 166.4 191 52.4
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.1e-39 165.2 181 51.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 5.1e-39 165.2 179 50.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 5.1e-39 165.2 185 51.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 5.1e-39 165.2 182 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 6.6e-39 164.9 183 49.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 6.6e-39 164.9 180 51.1
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 6.6e-39 164.9 148 59.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 8.6e-39 164.5 181 49.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-38 164.1 171 48.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.1e-38 164.1 142 59.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.5e-38 163.7 174 54.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.9e-38 163.3 179 48.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.9e-38 163.3 170 50.6
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.9e-38 163.3 192 51.6
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.9e-38 163.3 144 57.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.9e-38 163.3 180 50.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.5e-38 162.9 177 50.8
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.5e-38 162.9 199 48.2
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.5e-38 162.9 183 50.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.3e-38 162.5 166 49.4
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 3.3e-38 162.5 170 50.6
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.3e-38 162.5 139 59.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 4.3e-38 162.2 181 50.8
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.3e-38 162.2 177 50.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.3e-38 162.2 138 59.4
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.3e-38 162.2 173 51.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 7.3e-38 161.4 163 52.1
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 9.5e-38 161.0 184 52.2
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-37 160.6 173 52.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.8e-37 159.5 168 53.0
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.6e-37 159.1 152 55.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.6e-37 159.1 136 58.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.7e-37 158.7 181 49.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-36 157.5 184 50.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.1e-36 157.5 155 50.3
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-36 157.5 167 49.7
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-36 157.5 194 49.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.8e-36 156.8 176 50.6
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 4.0e-36 155.6 184 50.5
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 6.8e-36 154.8 170 50.0
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 6.8e-36 154.8 172 47.7
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.5e-35 153.7 188 48.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.4e-35 152.5 179 45.8
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.8e-35 151.8 179 49.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.7e-34 149.1 177 46.3
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.4e-34 148.3 177 48.6
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.4e-34 148.3 190 46.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 6.4e-34 148.3 177 47.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 6.4e-34 148.3 183 48.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.1e-33 147.5 172 50.0
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 5.4e-33 145.2 161 49.1
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 5.4e-33 145.2 192 45.3
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 9.2e-33 144.4 176 45.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.1e-32 143.3 180 46.1
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 4.6e-32 142.1 179 45.3
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.6e-32 142.1 179 45.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.3e-31 140.6 177 44.6
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.9e-31 139.0 177 44.1
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 3.9e-31 139.0 277 36.1
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.1e-31 138.7 164 48.2
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 8.6e-31 137.9 154 51.9
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.5e-30 137.1 169 46.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 9.5e-30 134.4 167 49.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 8.1e-29 131.3 145 51.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 8.1e-29 131.3 151 45.7
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.1e-28 129.4 214 39.7
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 2.2e-26 123.2 174 43.7
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 4.9e-26 122.1 173 46.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.2e-25 119.0 114 52.6
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 7.1e-25 118.2 79 67.1
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.6e-24 117.1 152 44.7
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 3.5e-24 115.9 182 43.4
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.6e-24 115.5 113 52.2
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.0e-23 114.4 180 40.6
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.3e-23 114.0 168 40.5
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.3e-23 113.2 192 37.5
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 6.6e-23 111.7 108 51.9
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.9e-22 110.2 149 46.3
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-19 100.5 154 40.3
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.6e-19 98.2 87 60.9
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.6e-16 90.5 153 36.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.1e-16 90.1 87 52.9
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-15 87.4 102 47.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.3e-15 87.4 100 55.0
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-15 86.7 117 47.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 3.0e-15 86.3 85 51.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 7.3e-14 81.6 75 54.7
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.3e-13 80.9 80 55.0
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.8e-13 79.0 100 46.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-12 77.8 80 52.5
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 9.0e-12 74.7 77 50.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.5e-11 73.9 64 59.4
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 2.6e-11 73.2 114 43.0
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.4e-09 67.4 64 56.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.7e-08 63.2 56 57.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.6e-08 62.4 123 39.0
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 6.0e-08 62.0 52 61.5
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.1e-07 58.9 83 44.6
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 3.3e-06 56.2 45 57.8


User provided reference genes

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