Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 0.0e+00 1364.0 685 100.0
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.1e-250 868.2 700 66.7
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 2.1e-116 424.1 704 39.9
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 3.8e-102 376.7 704 38.8
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.4e-101 374.0 699 37.5
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 7.1e-101 372.5 726 36.8
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 2.7e-100 370.5 690 37.8
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 6.2e-97 359.4 677 38.0
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 5.3e-96 356.3 699 37.9
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 6.9e-96 355.9 702 37.2
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 1.2e-95 355.1 698 38.7
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.0e-95 354.4 700 36.7
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.4e-95 353.6 702 36.9
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.4e-95 353.6 697 36.9
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 7.6e-95 352.4 706 37.0
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 9.9e-95 352.1 692 38.0
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.7e-94 351.3 704 35.9
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 1.7e-94 351.3 704 37.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.2e-94 350.9 702 38.5
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 2.9e-94 350.5 700 37.7
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 2.9e-94 350.5 681 37.3
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.9e-94 350.5 702 37.6
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.8e-94 350.1 706 37.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 8.4e-94 349.0 699 38.2
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 1.9e-93 347.8 691 36.5
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.4e-93 347.4 731 34.9
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 4.2e-93 346.7 706 37.5
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 5.4e-93 346.3 699 36.9
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 7.1e-93 345.9 681 37.2
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 9.3e-93 345.5 692 36.3
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-92 345.1 701 36.9
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-92 344.4 704 37.5
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 3.5e-92 343.6 698 37.1
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 6.0e-92 342.8 715 35.9
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 6.0e-92 342.8 695 37.8
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.0e-91 342.0 690 36.4
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.0e-91 342.0 701 37.4
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.3e-91 341.7 701 37.4
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 1.3e-91 341.7 708 37.0
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.3e-91 341.7 695 37.4
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.3e-91 341.7 700 37.1
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 1.8e-91 341.3 696 37.5
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 1.8e-91 341.3 705 37.2
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 3.0e-91 340.5 697 37.7
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 3.9e-91 340.1 697 36.6
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 8.7e-91 339.0 696 35.6
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.1e-90 338.6 699 36.9
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.1e-90 338.6 715 36.8
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 1.5e-90 338.2 700 36.3
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.5e-90 338.2 703 36.7
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.3e-90 337.0 695 36.1
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 3.3e-90 337.0 709 36.5
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 5.6e-90 336.3 695 37.6
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 7.4e-90 335.9 717 36.0
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 7.4e-90 335.9 692 36.8
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 7.4e-90 335.9 701 37.4
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 9.6e-90 335.5 702 37.0
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.3e-89 335.1 698 37.2
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.3e-89 335.1 707 36.5
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.3e-89 335.1 692 38.0
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.1e-89 334.3 697 36.0
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 2.1e-89 334.3 696 36.9
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.1e-89 334.3 689 36.7
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 3.7e-89 333.6 692 37.9
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.7e-89 333.6 693 37.2
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 4.8e-89 333.2 695 36.0
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 4.8e-89 333.2 680 36.5
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 6.2e-89 332.8 698 37.2
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 6.2e-89 332.8 680 36.5
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 6.2e-89 332.8 680 36.8
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 6.2e-89 332.8 701 36.4
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 8.1e-89 332.4 681 36.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.1e-88 332.0 699 37.6
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 2.4e-88 330.9 706 35.6
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.1e-88 330.5 690 36.1
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 3.1e-88 330.5 690 36.8
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 4.0e-88 330.1 697 35.9
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 4.0e-88 330.1 677 36.6
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 4.0e-88 330.1 690 36.4
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 5.3e-88 329.7 710 35.8
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 6.9e-88 329.3 701 35.8
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 6.9e-88 329.3 691 37.3
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 9.0e-88 328.9 692 38.2
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.2e-87 328.6 643 37.9
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 1.5e-87 328.2 689 38.2
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.5e-87 328.2 692 37.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.4e-87 327.0 704 36.8
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 3.4e-87 327.0 691 36.6
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.3e-86 325.1 688 37.8
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 2.2e-86 324.3 697 37.4
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.2e-86 324.3 688 37.2
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 4.9e-86 323.2 714 35.9
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 4.9e-86 323.2 686 35.1
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 6.5e-86 322.8 682 35.8
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 1.1e-85 322.0 699 34.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 2.5e-85 320.9 692 34.2
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 2.5e-85 320.9 637 36.4
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.2e-84 318.5 694 36.6
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 3.5e-84 317.0 702 36.5
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.5e-84 317.0 705 34.6
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 4.6e-84 316.6 700 34.7
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.3e-83 315.1 695 35.7
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 3.9e-83 313.5 713 34.8
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.9e-82 311.2 609 37.9
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 3.3e-82 310.5 702 34.0
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 3.3e-82 310.5 716 34.6
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 3.3e-82 310.5 683 34.0
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 5.7e-82 309.7 704 34.1
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.8e-81 307.4 688 34.6
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 3.7e-81 307.0 699 33.5
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 5.3e-80 303.1 621 35.3
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 6.9e-80 302.8 699 34.6
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 2.0e-79 301.2 802 32.8
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 4.5e-79 300.1 672 33.0
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.7e-78 298.1 722 34.6
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 2.9e-78 297.4 698 36.0
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 5.0e-78 296.6 625 37.3
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 8.4e-78 295.8 697 34.3
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.9e-77 294.7 710 34.6
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 7.1e-77 292.7 636 36.2
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 6.1e-76 289.7 739 34.0
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.0e-75 288.9 612 36.1
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 1.8e-75 288.1 693 34.6
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.7e-75 285.8 698 33.4
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.5e-74 284.3 685 34.2
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 3.3e-74 283.9 659 33.8
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.2e-73 281.2 698 32.5
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 4.8e-73 280.0 658 32.7
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 4.8e-73 280.0 696 33.9
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 8.2e-73 279.3 644 34.6
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-69 268.1 636 31.4
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.8e-67 261.5 672 32.0
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 2.0e-66 258.1 542 34.9
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 4.8e-65 253.4 529 35.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.4e-64 251.1 631 33.4
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 9.1e-64 249.2 642 32.6
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.0e-63 248.1 527 36.4
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 3.4e-63 247.3 676 32.7
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 5.9e-63 246.5 529 35.3
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.4e-56 225.3 641 31.0
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 4.1e-56 223.8 526 33.3
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 1.5e-55 221.9 464 36.0
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.6e-55 221.1 353 41.1
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 2.9e-54 217.6 527 34.5
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 2.7e-52 211.1 555 31.5
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 6.1e-52 209.9 259 48.6
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 8.0e-52 209.5 479 34.0
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.0e-51 209.1 307 43.3
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 2.6e-50 204.5 303 43.6
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.6e-47 194.5 302 42.7
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.5e-45 188.0 535 30.5
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 2.8e-41 174.5 671 27.7
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.1e-40 169.5 742 27.5
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 1.3e-33 149.1 257 41.2
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 3.3e-29 134.4 272 36.0
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 2.1e-28 131.7 443 26.9
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 5.2e-27 127.1 268 36.9
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.9e-27 126.3 338 31.1
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 4.9e-25 120.6 198 41.9
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.6e-23 115.5 416 28.8
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 4.4e-18 97.4 101 49.5
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 4.9e-17 94.0 115 45.2
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.9e-14 84.3 206 31.6
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.1e-13 82.8 134 41.8
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.5e-13 81.6 95 45.3
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 4.3e-13 80.9 81 49.4
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.6e-12 79.0 61 62.3
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.4e-11 75.9 79 49.4
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 5.2e-11 73.9 73 47.9
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 6.4e-09 67.0 66 45.5
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.1e-08 66.2 241 24.5
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 7.1e-08 63.5 122 36.1
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-06 57.0 52 55.8


User provided reference genes

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