Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.7e-211 738.4 372 100.0
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 2.0e-97 360.1 331 54.7
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.0e-93 347.8 344 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 6.8e-90 335.1 333 51.7
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.4e-87 327.4 332 51.5
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.1e-76 291.2 335 47.2
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.5e-76 290.0 332 46.1
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 7.3e-76 288.5 335 46.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.6e-75 287.3 332 45.2
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.8e-74 283.9 327 46.2
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 5.2e-74 282.3 341 44.3
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 9.0e-74 281.6 340 43.8
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 2.0e-73 280.4 336 46.1
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 4.4e-73 279.3 327 45.6
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 7.6e-73 278.5 327 44.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.9e-72 276.6 331 45.3
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 4.9e-72 275.8 337 45.1
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 4.9e-72 275.8 341 43.7
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 4.9e-72 275.8 327 44.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.4e-72 275.0 333 44.1
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.1e-71 274.6 336 43.8
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.4e-71 274.2 335 44.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.9e-71 273.9 330 44.8
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.9e-71 273.9 327 43.4
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 3.2e-71 273.1 335 43.9
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 3.2e-71 273.1 335 43.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 3.2e-71 273.1 336 44.0
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.2e-71 272.7 330 44.5
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 4.2e-71 272.7 327 43.4
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 5.4e-71 272.3 336 43.5
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 5.4e-71 272.3 330 44.5
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 5.4e-71 272.3 341 42.8
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 7.1e-71 271.9 339 43.1
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 7.1e-71 271.9 330 44.8
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 9.3e-71 271.6 336 43.5
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 9.3e-71 271.6 345 43.2
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.2e-70 271.2 335 43.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.2e-70 271.2 329 43.8
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-70 270.8 330 44.2
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.7e-70 270.0 339 42.8
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 2.7e-70 270.0 332 43.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 2.7e-70 270.0 335 43.6
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.7e-70 270.0 335 43.6
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.7e-70 270.0 348 42.8
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.7e-70 270.0 329 43.8
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.7e-70 270.0 332 44.0
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.6e-70 269.2 332 44.3
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 6.0e-70 268.9 332 44.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 6.0e-70 268.9 331 43.5
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 6.0e-70 268.9 329 43.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.0e-69 268.1 332 44.3
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.3e-69 267.7 335 43.9
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.3e-69 267.7 329 42.9
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.3e-69 267.7 327 42.8
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.7e-69 267.3 327 43.4
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.7e-69 267.3 329 43.2
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 2.3e-69 266.9 335 43.9
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.0e-69 266.5 332 42.5
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 5.1e-69 265.8 339 42.2
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 5.1e-69 265.8 333 42.0
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.1e-68 264.6 330 43.0
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.5e-68 264.2 297 45.5
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 3.3e-68 263.1 339 42.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.3e-68 263.1 368 41.3
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.3e-68 263.1 368 41.8
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 4.3e-68 262.7 335 43.0
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 4.3e-68 262.7 327 42.8
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.3e-67 261.2 327 43.1
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.8e-67 260.0 329 43.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 4.8e-67 259.2 328 43.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 6.2e-67 258.8 338 42.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.1e-66 258.1 327 41.3
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.8e-66 257.3 327 41.6
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.8e-66 257.3 329 43.5
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 2.4e-66 256.9 340 42.9
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.2e-65 254.6 332 42.8
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.0e-65 253.8 366 39.1
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.0e-65 253.8 330 41.2
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.6e-65 253.4 333 40.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.2e-64 250.4 333 40.2
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 3.2e-63 246.5 350 40.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 9.3e-63 245.0 330 41.8
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 2.7e-62 243.4 378 36.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.9e-62 241.9 319 42.9
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 7.9e-62 241.9 343 40.5
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.3e-61 240.4 331 40.2
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.9e-60 237.3 302 42.7
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 3.3e-60 236.5 339 38.9
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 3.3e-60 236.5 329 40.1
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.3e-59 234.6 342 40.4
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.6e-59 234.2 332 39.2
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.6e-59 234.2 342 40.1
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.1e-59 233.8 383 35.5
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 3.7e-59 233.0 274 44.2
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.4e-58 231.1 352 38.9
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.4e-58 231.1 226 50.9
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.8e-58 230.7 219 51.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.4e-58 230.3 218 51.4
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 9.9e-57 224.9 326 37.7
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 1.7e-56 224.2 295 40.0
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.8e-56 223.0 279 43.0
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 4.9e-56 222.6 327 38.5
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 6.4e-56 222.2 329 38.9
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.6e-54 217.6 249 46.6
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.7e-54 216.9 331 37.8
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.6e-54 216.1 205 52.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.3e-53 214.5 261 42.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 5.6e-52 209.1 326 37.7
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 2.4e-50 203.8 259 42.1
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 5.8e-49 199.1 200 51.0
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 5.5e-47 192.6 299 39.1
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 7.4e-44 182.2 354 34.5
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.8e-42 177.6 346 35.5
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 6.9e-42 175.6 365 33.4
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 5.0e-40 169.5 307 36.8
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-39 168.3 171 49.1
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.2e-39 165.6 171 50.9
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 4.3e-36 156.4 159 47.8
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 7.4e-36 155.6 328 30.5
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 5.5e-31 139.4 359 32.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.4e-23 114.8 326 29.8
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.9e-23 114.4 123 42.3
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.9e-23 114.4 169 39.1
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 7.2e-23 112.5 207 37.7
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.6e-20 104.0 144 42.4
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.2e-11 74.3 94 40.4
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 3.7e-11 73.6 59 57.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 8.2e-11 72.4 156 28.8
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.6e-09 68.2 193 29.0
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.8e-08 63.5 107 34.6


User provided reference genes

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