Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.9e-279 963.0 496 100.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.4e-175 618.2 496 66.9
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.1e-100 371.3 525 44.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-84 317.4 314 52.5
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-83 314.7 314 52.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-75 287.7 309 49.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-72 277.3 297 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.2e-71 272.3 500 40.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.4e-69 268.1 474 37.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.2e-69 266.2 350 43.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-66 257.7 365 42.2
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.7e-65 253.8 402 40.3
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.0e-64 251.9 419 37.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.3e-64 250.8 388 39.4
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.3e-64 250.8 412 39.8
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 5.0e-64 249.6 370 40.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.9e-63 247.7 387 38.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-63 247.3 380 39.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.3e-63 246.9 399 38.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 7.3e-63 245.7 368 41.6
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.8e-62 243.8 386 37.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.6e-62 243.4 400 39.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.7e-62 243.0 475 35.2
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.1e-62 242.7 376 39.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.0e-61 241.9 388 38.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.8e-61 241.1 377 40.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.8e-61 241.1 376 39.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.3e-61 240.7 426 36.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.3e-61 240.7 375 38.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.0e-61 240.0 387 38.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.0e-61 240.0 387 38.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.2e-61 239.6 420 36.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 5.2e-61 239.6 388 38.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-61 239.6 373 39.7
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.9e-61 238.8 473 34.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.9e-61 238.8 360 41.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 8.9e-61 238.8 462 36.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-60 238.4 376 39.1
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-60 238.0 360 40.8
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-60 238.0 414 38.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 7.5e-60 235.7 374 38.5
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 7.5e-60 235.7 400 39.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.7e-59 234.6 401 38.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.9e-59 233.8 465 34.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.9e-59 233.8 406 39.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.9e-59 233.0 360 38.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.9e-59 233.0 369 39.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.9e-59 233.0 398 38.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 8.3e-59 232.3 309 43.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.3e-59 232.3 368 39.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.4e-58 231.5 458 35.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-58 231.1 477 36.3
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.4e-58 230.7 309 42.7
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.2e-58 230.3 495 36.0
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.2e-58 230.3 364 39.6
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.4e-58 229.6 310 42.3
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.4e-58 229.6 310 41.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.4e-58 229.6 358 39.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 9.2e-58 228.8 396 36.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.2e-57 228.4 381 38.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.2e-57 228.4 365 38.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.2e-57 228.4 386 38.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.0e-57 227.6 466 34.1
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.0e-57 227.6 426 35.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.7e-57 227.3 472 35.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 4.6e-57 226.5 457 35.0
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.8e-57 225.7 357 40.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 7.8e-57 225.7 311 43.4
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.0e-56 225.3 361 38.2
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.7e-56 224.6 473 35.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.3e-56 224.2 473 35.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.3e-56 224.2 426 34.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.3e-56 224.2 493 35.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.0e-56 223.8 414 36.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 3.0e-56 223.8 309 42.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.9e-56 223.4 461 34.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 5.0e-56 223.0 508 33.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.6e-56 222.2 425 36.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.6e-56 222.2 361 40.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.6e-56 222.2 425 37.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-55 221.5 477 35.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.5e-55 221.5 505 36.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.9e-55 221.1 381 36.5
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.9e-55 221.1 308 42.9
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.5e-55 220.7 451 34.6
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 3.3e-55 220.3 396 37.1
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.3e-55 219.9 480 34.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 4.3e-55 219.9 494 33.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.3e-55 219.9 391 36.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.3e-55 219.9 396 36.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 5.6e-55 219.5 368 38.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 5.6e-55 219.5 391 35.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.2e-54 218.4 404 37.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.2e-54 218.4 481 34.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.2e-54 218.4 369 37.1
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-54 218.0 310 41.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.1e-54 217.6 310 41.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.1e-54 217.6 371 36.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.8e-54 217.2 417 34.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 4.7e-54 216.5 379 38.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-53 215.3 462 34.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.8e-53 214.5 366 37.4
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-53 214.5 461 35.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.2e-53 213.0 303 39.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.8e-53 212.6 410 35.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.8e-53 212.6 425 35.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.8e-53 212.6 310 39.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 8.9e-53 212.2 465 35.5
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.2e-52 211.8 457 34.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.5e-52 211.5 436 34.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.6e-52 210.7 410 34.6
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.6e-52 210.7 458 35.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 3.4e-52 210.3 534 31.3
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 4.4e-52 209.9 371 36.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.8e-52 209.5 410 35.4
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.8e-52 209.5 237 45.1
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-51 208.4 482 33.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.7e-51 208.0 408 35.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.9e-51 207.2 455 33.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.9e-51 207.2 410 35.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.1e-50 205.3 438 34.0
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.9e-50 204.5 353 38.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.2e-50 203.8 386 34.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.4e-50 203.0 439 33.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.0e-50 202.6 410 34.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 9.2e-50 202.2 288 41.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.7e-49 200.7 334 38.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.5e-49 200.3 476 32.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.8e-49 199.1 404 34.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.0e-48 198.7 313 39.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 5.0e-48 196.4 466 32.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.6e-48 196.1 405 33.6
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 8.6e-48 195.7 463 32.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.3e-47 193.7 465 33.5
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.3e-47 193.4 474 31.2
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 7.3e-47 192.6 338 36.1
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-46 190.3 238 47.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 6.2e-46 189.5 318 36.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 8.1e-46 189.1 359 35.4
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 4.0e-45 186.8 506 31.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 8.9e-45 185.7 324 35.5
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 7.5e-44 182.6 213 49.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.3e-43 181.8 459 30.9
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.7e-43 181.4 486 28.8
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 6.4e-43 179.5 420 31.9
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.5e-41 173.7 333 33.6
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.3e-40 171.0 306 35.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.0e-40 170.6 357 33.3
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.4e-37 161.8 296 36.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.2e-37 159.8 305 34.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-36 157.9 213 40.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.8e-36 156.4 376 35.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.9e-35 154.1 214 42.5
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 7.3e-31 139.4 133 52.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 8.1e-30 136.0 262 36.3
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.1e-29 134.0 305 32.5
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.0e-29 133.7 215 36.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-28 131.7 205 42.0
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-28 131.0 203 41.4
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-27 127.9 268 34.3
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.3e-24 117.9 201 37.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 3.0e-24 117.5 208 38.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 6.2e-22 109.8 192 38.0
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 5.3e-21 106.7 140 44.3
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.6e-20 102.8 400 27.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.7e-19 101.7 242 32.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.1e-17 94.7 290 29.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 3.7e-14 84.0 360 24.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.3e-13 80.1 201 32.8
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.9e-11 74.3 94 44.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.9e-10 71.6 98 40.8
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 5.5e-10 70.1 138 34.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.8e-06 57.0 60 46.7


User provided reference genes

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