Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 0.0e+00 1688.7 837 100.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.8e-189 666.0 862 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 7.2e-180 635.2 844 43.4
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.4e-151 539.3 856 37.4
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 7.2e-148 528.9 848 38.3
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.2e-147 528.1 849 38.0
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.8e-146 524.2 856 38.0
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.8e-146 524.2 850 37.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.0e-146 523.1 850 38.4
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.8e-146 522.3 853 37.9
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.8e-146 522.3 850 38.2
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.2e-145 521.5 857 38.2
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.2e-145 521.5 853 38.2
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.5e-145 521.2 853 36.7
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 2.6e-145 520.4 850 37.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 3.4e-145 520.0 846 38.2
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.2e-144 517.3 847 37.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 3.7e-144 516.5 885 37.7
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.4e-143 514.6 851 36.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 4.1e-143 513.1 862 38.2
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.4e-143 512.7 853 37.0
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 5.4e-143 512.7 855 37.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 7.0e-143 512.3 849 37.7
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.6e-142 511.1 849 37.0
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 3.5e-142 510.0 852 37.1
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 5.9e-142 509.2 848 37.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-141 508.1 849 36.9
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.3e-141 507.3 844 37.0
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.9e-141 506.9 859 37.7
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.9e-141 506.9 856 37.9
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 5.0e-141 506.1 853 37.2
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 6.6e-141 505.8 849 36.7
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-140 505.0 849 36.7
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-140 505.0 853 37.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.1e-140 505.0 854 37.2
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.5e-140 504.6 845 36.3
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.5e-140 504.6 882 36.3
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.3e-140 503.4 850 36.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 3.3e-140 503.4 848 38.2
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.3e-140 503.1 856 38.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 5.6e-140 502.7 851 37.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 7.3e-140 502.3 855 36.5
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.3e-140 502.3 847 37.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 9.5e-140 501.9 843 36.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 9.5e-140 501.9 849 36.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.6e-139 501.1 854 36.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.1e-139 500.7 828 38.0
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.6e-139 500.0 852 36.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 4.7e-139 499.6 847 35.9
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.0e-138 498.4 855 36.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.0e-138 498.4 852 36.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.8e-138 497.7 857 35.9
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.3e-138 497.3 851 37.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.0e-138 496.9 839 36.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 4.0e-138 496.5 857 36.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 4.0e-138 496.5 857 36.3
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.0e-137 494.2 856 36.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 5.8e-137 492.7 844 36.3
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 4.9e-136 489.6 851 36.2
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 4.9e-136 489.6 845 36.0
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 6.4e-136 489.2 852 35.9
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 8.3e-136 488.8 861 36.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 8.3e-136 488.8 852 35.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.1e-135 488.4 847 35.9
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-135 488.4 843 35.8
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.4e-135 488.0 843 36.5
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.4e-135 487.3 847 35.4
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.2e-135 486.9 858 36.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.4e-135 486.1 858 36.5
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.4e-135 486.1 858 36.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 7.0e-135 485.7 849 36.3
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.2e-134 485.0 851 36.2
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.0e-134 484.2 847 35.2
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 2.7e-134 483.8 850 35.1
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 4.6e-134 483.0 843 35.6
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 4.6e-134 483.0 858 35.5
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.0e-133 481.9 847 35.1
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.0e-133 481.9 850 35.8
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.7e-133 481.1 846 34.9
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.7e-133 481.1 859 34.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.7e-133 481.1 846 34.8
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.0e-133 480.3 849 36.3
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 3.9e-133 479.9 863 36.4
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-132 478.4 847 35.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.1e-132 478.4 845 35.4
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 3.3e-132 476.9 858 36.2
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 9.5e-132 475.3 853 36.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.8e-131 473.8 848 35.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.8e-131 473.8 850 35.9
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.6e-131 473.4 854 36.1
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 4.0e-130 469.9 857 36.4
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 4.0e-130 469.9 913 34.3
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.4e-129 466.8 854 36.1
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-127 461.8 909 33.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.6e-123 448.0 864 34.7
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.3e-122 444.1 850 35.1
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-121 441.4 850 34.5
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.9e-117 426.8 769 36.3
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 2.2e-112 411.0 608 41.0
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 4.9e-112 409.8 651 38.4
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.3e-109 401.0 850 32.0
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.7e-104 384.8 886 32.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.6e-102 378.3 556 38.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.1e-102 377.9 772 33.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.9e-101 373.6 774 33.5
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 3.9e-101 373.6 922 30.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 8.7e-101 372.5 788 34.1
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 7.3e-100 369.4 879 30.8
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 4.8e-99 366.7 852 32.0
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 2.0e-97 361.3 763 32.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.9e-96 356.7 767 32.1
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.2e-81 308.9 480 38.3
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.6e-81 307.8 740 32.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 4.6e-78 297.0 755 30.7
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.0e-72 276.9 613 31.0
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 3.3e-68 264.2 596 31.4
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 3.7e-67 260.8 860 29.4
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 3.1e-66 257.7 348 42.8
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 6.5e-56 223.4 764 27.7
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.2e-55 219.9 491 31.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.1e-52 212.6 719 28.1
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.5e-44 185.7 432 33.1
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.4e-44 184.5 378 33.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.0e-29 136.3 148 42.6
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-23 115.9 291 31.6
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.5e-23 115.9 291 31.6
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.1e-22 112.1 291 31.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 8.0e-22 110.2 163 40.5
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.2e-19 102.1 102 48.0
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 4.7e-14 84.3 201 33.3
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-13 83.2 218 29.8
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.4e-13 82.8 216 28.2
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 7.5e-12 77.0 101 39.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.5e-07 62.8 59 50.8
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 4.7e-06 57.8 113 31.0


User provided reference genes

Program Settings