Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.3e-236 822.4 600 100.0
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.7e-152 543.1 599 77.8
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 4.2e-33 147.1 526 48.9
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 3.3e-25 120.9 334 56.9
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 4.3e-25 120.6 536 43.8
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 4.3e-25 120.6 317 55.5
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 5.6e-25 120.2 320 56.9
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.2e-24 119.0 321 61.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 2.1e-24 118.2 321 56.1
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.1e-24 118.2 321 58.3
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.8e-24 117.9 317 56.2
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 3.6e-24 117.5 380 57.6
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.6e-24 117.5 363 56.2
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 3.6e-24 117.5 363 56.2
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.6e-24 117.5 321 59.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 6.1e-24 116.7 321 60.7
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 6.1e-24 116.7 321 55.5
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.4e-23 115.5 334 58.4
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.3e-23 114.8 323 57.6
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 4.0e-23 114.0 321 53.6
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 5.2e-23 113.6 378 56.3
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 8.9e-23 112.8 323 53.9
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.2e-22 112.5 555 42.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.0e-22 111.7 319 59.6
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.4e-22 110.9 336 53.0
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.4e-22 110.5 538 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 5.8e-22 110.2 360 28.6
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 5.8e-22 110.2 377 48.8
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 5.8e-22 110.2 334 51.2
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 5.8e-22 110.2 321 62.0
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 7.5e-22 109.8 336 54.2
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 7.5e-22 109.8 336 54.2
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 7.5e-22 109.8 330 54.2
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.8e-22 109.4 323 55.4
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.8e-22 109.4 323 55.4
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.3e-21 109.0 340 59.7
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.7e-21 108.6 334 61.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.7e-21 108.6 321 62.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 2.2e-21 108.2 316 55.4
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.2e-21 108.2 322 54.3
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 2.2e-21 108.2 321 61.7
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.2e-21 108.2 398 54.3
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.9e-21 107.8 319 61.1
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 2.9e-21 107.8 317 59.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 6.4e-21 106.7 388 50.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 6.4e-21 106.7 535 45.6
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 8.3e-21 106.3 321 60.4
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.4e-20 105.5 411 52.1
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.9e-20 105.1 323 55.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 3.2e-20 104.4 323 59.4
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 3.2e-20 104.4 323 59.4
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.2e-20 104.4 321 60.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 5.4e-20 103.6 353 56.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 5.4e-20 103.6 322 63.0
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 5.4e-20 103.6 373 49.9
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 9.2e-20 102.8 330 60.0
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 9.2e-20 102.8 391 51.4
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 9.2e-20 102.8 322 55.0
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.2e-19 102.4 321 60.7
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.0e-19 101.7 321 55.8
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.7e-19 101.3 351 58.4
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 2.7e-19 101.3 323 61.9
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 4.6e-19 100.5 321 60.7
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 4.6e-19 100.5 321 60.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 6.0e-19 100.1 321 53.6
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 6.0e-19 100.1 321 53.6
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 6.0e-19 100.1 337 56.4
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 6.0e-19 100.1 358 55.0
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 7.8e-19 99.8 288 59.0
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.0e-18 99.4 386 50.8
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.3e-18 99.0 321 53.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.3e-18 99.0 321 53.3
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.3e-18 99.0 321 53.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 1.3e-18 99.0 321 53.3
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.3e-18 99.0 330 60.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.3e-18 99.0 323 53.9
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 2.3e-18 98.2 321 53.9
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.9e-18 97.4 321 53.0
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.0e-18 97.1 321 59.5
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 6.6e-18 96.7 336 57.7
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 8.6e-18 96.3 341 50.7
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.5e-17 95.5 321 58.9
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 1.9e-17 95.1 388 50.5
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 7.3e-17 93.2 321 52.6
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 7.3e-17 93.2 320 58.1
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 7.3e-17 93.2 321 53.9
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 1.6e-16 92.0 375 53.6
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 4.7e-16 90.5 319 52.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 6.2e-16 90.1 321 52.3
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 6.2e-16 90.1 386 33.2
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 8.1e-16 89.7 86 59.3
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 6.8e-15 86.7 323 59.4
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.2e-14 85.9 88 59.1
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.5e-14 85.5 401 46.9
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.3e-13 82.4 323 55.1
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.7e-13 82.0 88 56.8
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.7e-13 82.0 84 45.2
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 2.9e-13 81.3 86 57.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 8.3e-13 79.7 84 42.9
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.1e-12 79.3 84 42.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 7.1e-12 76.6 84 39.3
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 7.1e-12 76.6 319 57.7
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 9.2e-12 76.3 288 59.7
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.2e-11 75.9 80 42.5
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.1e-11 75.1 104 33.7
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.7e-11 74.7 84 40.5
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 3.5e-11 74.3 81 43.2
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 7.8e-11 73.2 84 39.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.0e-10 72.8 80 40.0
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.3e-10 72.4 84 39.3
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 6.6e-10 70.1 84 52.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 8.6e-10 69.7 84 53.6
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.1e-09 69.3 69 47.8
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.4e-07 62.4 51 52.9
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 1.5e-06 58.9 74 40.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 2.0e-06 58.5 84 33.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.4e-06 57.4 84 33.3


User provided reference genes

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