Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 0.0e+00 2363.2 1223 100.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 0.0e+00 1959.5 1223 82.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 0.0e+00 1124.4 1249 49.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 2.1e-276 956.4 1249 43.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.7e-275 953.4 1252 43.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 2.1e-273 946.4 1251 44.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 3.4e-271 939.1 1250 42.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 9.9e-271 937.6 1243 43.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 8.4e-270 934.5 1241 42.7
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 4.1e-269 932.2 1243 42.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 1.6e-268 930.2 1232 43.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 1.3e-267 927.2 1236 43.4
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.1e-266 924.1 1247 43.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 1.5e-266 923.7 1231 43.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 5.6e-266 921.8 1235 42.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 7.3e-266 921.4 1242 42.4
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 1.2e-265 920.6 1246 42.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.1e-265 919.8 1237 43.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 3.6e-265 919.1 1229 43.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 3.6e-265 919.1 1232 42.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 3.6e-265 919.1 1241 42.5
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 3.6e-265 919.1 1232 43.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.1e-264 917.5 1241 41.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 2.0e-263 913.3 1239 42.7
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 2.6e-263 912.9 1229 42.6
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 2.6e-263 912.9 1251 42.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 3.4e-263 912.5 1229 42.6
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 5.8e-263 911.8 1230 42.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 9.9e-263 911.0 1222 43.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 3.8e-262 909.1 1246 41.7
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 3.8e-262 909.1 1232 43.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 6.4e-262 908.3 1249 42.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 6.4e-262 908.3 1247 42.6
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 6.4e-262 908.3 1203 43.1
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 8.4e-262 907.9 1230 42.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-261 907.5 1230 42.5
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.1e-261 907.5 1219 43.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 1.9e-261 906.7 1235 42.7
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.9e-261 906.7 1255 42.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 2.4e-261 906.4 1235 42.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.4e-261 906.4 1232 42.7
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.2e-261 906.0 1230 42.4
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.2e-261 906.0 1222 42.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 4.2e-261 905.6 1231 42.2
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.4e-261 905.2 1213 42.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 1.2e-260 904.0 1235 41.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.7e-260 902.9 1208 43.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.6e-260 902.1 1223 42.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 6.0e-260 901.7 1228 41.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 6.0e-260 901.7 1236 43.0
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.0e-259 901.0 1222 42.5
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 1.7e-259 900.2 1249 42.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 3.0e-259 899.4 1227 42.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 5.1e-259 898.7 1230 42.6
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 8.7e-259 897.9 1205 42.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.5e-258 897.1 1250 41.5
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.9e-258 896.7 1230 42.2
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 2.5e-258 896.3 1237 42.4
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 5.6e-258 895.2 1222 42.6
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.3e-257 894.0 1238 42.4
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.6e-257 893.6 1228 42.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 3.6e-257 892.5 1232 42.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 6.2e-257 891.7 1228 42.5
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.4e-256 890.6 1241 41.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.4e-256 890.6 1239 41.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.4e-256 889.8 1233 42.3
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 9.0e-256 887.9 1185 42.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.2e-255 887.5 1199 42.3
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.0e-255 886.7 1230 42.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 4.5e-255 885.6 1230 42.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.9e-255 884.4 1225 40.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 1.7e-254 883.6 1231 41.4
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 2.2e-254 883.2 1228 42.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 4.9e-254 882.1 1238 41.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 4.9e-254 882.1 1244 41.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.1e-253 880.9 1215 41.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 1.4e-253 880.6 1235 41.2
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 7.1e-253 878.2 1218 42.6
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 7.1e-253 878.2 1239 41.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 3.5e-252 875.9 1250 42.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 3.5e-252 875.9 1231 40.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 1.0e-251 874.4 1224 41.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 1.3e-251 874.0 1224 42.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.8e-251 873.6 1257 40.7
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.9e-250 870.2 1238 41.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 2.8e-249 866.3 1216 41.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.8e-248 863.6 1184 41.5
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.4e-248 863.2 1209 41.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 4.0e-248 862.4 1230 40.8
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 2.4e-245 853.2 1240 40.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 5.5e-245 852.0 1250 40.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 6.7e-243 845.1 1235 40.1
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 2.0e-239 833.6 1200 40.9
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 2.5e-237 826.6 1293 39.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 3.2e-237 826.2 1217 40.6
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 3.0e-235 819.7 1140 41.1
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 2.8e-233 813.1 1236 39.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-227 793.9 1235 40.2
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 9.1e-224 781.6 1230 38.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.5e-223 780.8 1170 40.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.9e-222 776.5 1172 40.6
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 9.4e-221 771.5 1252 37.1
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 8.8e-219 765.0 1024 42.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 7.4e-210 735.3 993 42.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.1e-205 721.5 1318 36.3
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.0e-187 661.8 1075 38.0
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 5.7e-186 656.0 833 43.7
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.3e-185 654.8 900 41.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.6e-178 630.6 804 44.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 2.8e-172 610.5 976 38.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.3e-147 526.6 1189 32.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 6.2e-140 503.1 780 40.3
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 6.9e-139 499.6 1192 31.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.4e-136 490.0 1189 31.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.1e-136 489.6 1206 31.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 8.7e-134 482.6 1189 31.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 6.4e-129 466.5 656 40.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.9e-119 433.0 642 40.3
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.3e-117 427.2 598 42.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-108 398.3 1003 31.5
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-106 392.5 567 41.3
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.3e-97 362.5 604 37.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.0e-86 324.7 479 39.7
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.7e-85 320.5 471 40.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.3e-81 309.3 435 43.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 3.2e-80 304.7 1370 25.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.9e-60 238.4 330 42.4
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.7e-49 202.6 306 40.5
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.9e-44 184.5 273 41.0
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.7e-41 176.0 232 43.5
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.4e-35 154.5 188 46.3
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.7e-34 152.1 770 23.9
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.1e-30 138.7 217 36.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.4e-29 134.8 218 39.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.9e-24 119.4 457 26.0
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.0e-22 111.7 405 25.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 9.0e-22 110.5 108 50.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.4e-11 76.6 98 44.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 2.1e-10 72.8 58 60.3
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.5e-08 65.9 213 26.8
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.8e-07 61.6 73 45.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 6.3e-07 61.2 61 52.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-06 59.3 73 47.9


User provided reference genes

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