Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.1e-30 136.0 67 100.0
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 3.3e-27 124.4 66 87.9
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.2e-21 105.9 64 76.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.6e-18 94.4 64 70.3
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.0e-16 88.6 64 57.8
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 61.3
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 7.6e-16 86.7 62 59.7
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 7.6e-16 86.7 62 59.7
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 9.9e-16 86.3 59 59.3
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 9.9e-16 86.3 62 56.5
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 9.9e-16 86.3 62 59.7
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 9.9e-16 86.3 62 58.1
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.3e-15 85.9 62 59.7
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.3e-15 85.9 62 58.1
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.3e-15 85.9 62 59.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.7e-15 85.5 62 59.7
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.7e-15 85.5 62 56.5
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.7e-15 85.5 62 56.5
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 2.2e-15 85.1 59 57.6
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.2e-15 85.1 62 58.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 2.9e-15 84.7 62 59.7
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.9e-15 84.7 62 58.1
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.9e-15 84.7 62 56.5
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.9e-15 84.7 62 56.5
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.9e-15 84.7 51 66.7
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 3.8e-15 84.3 62 56.5
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 3.8e-15 84.3 62 54.8
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 3.8e-15 84.3 56 60.7
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 56.5
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 58.1
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 59.7
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 59.7
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 59.7
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 54.8
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 54.8
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 54.8
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 54.8
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 58.1
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 4.9e-15 84.0 62 56.5
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 59.7
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 6.4e-15 83.6 59 57.6
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 54.8
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 53.2
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.4e-15 83.6 62 59.7
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 8.4e-15 83.2 62 54.8
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.4e-15 83.2 62 58.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.4e-15 83.2 62 58.1
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 8.4e-15 83.2 62 54.8
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-14 82.8 62 58.1
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-14 82.8 62 56.5
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.1e-14 82.8 63 55.6
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.1e-14 82.8 62 56.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-14 82.4 62 58.1
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.4e-14 82.4 62 54.8
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.4e-14 82.4 62 53.2
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.4e-14 82.4 64 53.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.4e-14 82.4 62 54.8
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.4e-14 82.4 62 56.5
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 54.8
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 56.5
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 56.5
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-14 82.0 51 64.7
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 53.2
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 54.8
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 54.8
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 54.8
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.9e-14 82.0 62 54.8
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.9e-14 82.0 51 64.7
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.4e-14 81.6 62 54.8
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.4e-14 81.6 62 54.8
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.4e-14 81.6 62 54.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.4e-14 81.6 51 66.7
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 3.2e-14 81.3 51 66.7
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 3.2e-14 81.3 51 66.7
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.2e-14 81.3 62 54.8
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 3.2e-14 81.3 51 66.7
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 3.2e-14 81.3 51 66.7
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 3.2e-14 81.3 62 53.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.2e-14 81.3 62 54.8
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.2e-14 81.3 62 53.2
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.2e-14 81.3 62 54.8
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.2e-14 81.3 51 66.7
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.2e-14 80.9 62 56.5
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 5.5e-14 80.5 56 62.5
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 5.5e-14 80.5 61 54.1
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 5.5e-14 80.5 61 54.1
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 7.1e-14 80.1 62 53.2
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 7.1e-14 80.1 62 53.2
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 7.1e-14 80.1 62 56.5
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.3e-14 79.7 62 56.5
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.2e-13 79.3 62 51.6
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.2e-13 79.3 55 58.2
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.2e-13 79.3 62 53.2
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.2e-13 79.3 62 53.2
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.2e-13 79.3 56 57.1
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.6e-13 79.0 59 54.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.6e-13 79.0 62 53.2
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 2.1e-13 78.6 58 58.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.7e-13 78.2 65 55.4
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.7e-13 78.2 65 52.3
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.7e-13 78.2 56 60.7
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 3.5e-13 77.8 56 58.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 3.5e-13 77.8 62 53.2
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 3.5e-13 77.8 62 53.2
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.5e-13 77.8 51 62.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.6e-13 77.4 51 62.7
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.0e-13 77.0 59 54.2
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.0e-13 77.0 59 54.2
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 7.9e-13 76.6 59 52.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.8e-12 75.5 62 51.6
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.3e-12 75.1 49 59.2
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-12 75.1 66 50.0
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 3.0e-12 74.7 62 50.0
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 6.7e-12 73.6 64 46.9
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 1.1e-11 72.8 59 52.5
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.1e-11 72.8 59 52.5
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.5e-11 72.4 70 50.0
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.9e-11 72.0 79 45.6
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.5e-11 71.6 92 40.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.3e-11 70.9 84 40.5
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 7.4e-11 70.1 86 40.7
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 7.4e-11 70.1 91 38.5
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 9.6e-11 69.7 62 45.2
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.3e-10 69.3 51 54.9
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.6e-10 68.9 59 47.5
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.1e-10 68.6 50 60.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.1e-10 68.6 51 64.7
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.8e-10 68.2 59 47.5
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.7e-10 67.8 50 56.0
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.7e-10 67.8 50 58.0
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 4.8e-10 67.4 60 50.0
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.2e-10 67.0 50 56.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.2e-10 67.0 64 45.3
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.1e-09 66.2 47 59.6
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.1e-09 66.2 51 54.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-09 66.2 50 54.0
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.1e-09 66.2 84 41.7
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.4e-09 65.9 50 52.0
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.4e-09 65.9 50 54.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.8e-09 65.5 50 54.0
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 3.1e-09 64.7 62 45.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-09 64.7 52 50.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 6.9e-09 63.5 47 57.4
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 6.9e-09 63.5 60 43.3
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.9e-09 63.5 44 54.5
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.5e-08 62.4 50 52.0
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.0e-08 62.0 50 52.0
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.6e-08 61.6 39 64.1
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 3.4e-08 61.2 47 51.1
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 3.4e-08 61.2 50 52.0
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.4e-08 61.2 39 64.1
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-07 59.7 47 59.6
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-07 58.2 54 46.3
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 4.9e-07 57.4 38 60.5
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.3e-06 53.1 44 45.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 9.3e-06 53.1 52 42.3


User provided reference genes

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