Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_24820 Physcomitrium patens HOM05D000144 ORTHO05D312097 3.3e-25 117.5 55 100.0
Lj3g0006617 Lotus japonicus HOM05D000144 ORTHO05D000392 3.9e-10 67.4 54 55.6
unitig_0.g2292 Utricularia gibba HOM05D000144 ORTHO05D000392 1.9e-09 65.1 48 62.5
Thecc.10G148800 Theobroma cacao HOM05D000144 ORTHO05D000392 3.3e-09 64.3 48 58.3
Eucgr.G03215 Eucalyptus grandis HOM05D000144 ORTHO05D000392 5.7e-09 63.5 54 57.4
Hund13387 Selenicereus undatus HOM05D000144 ORTHO05D000392 7.4e-09 63.2 52 53.8
Ca_23973_v3 Cicer arietinum L. HOM05D000144 ORTHO05D000392 9.7e-09 62.8 52 55.8
PGR031G1730 Punica granatum HOM05D000144 ORTHO05D000392 1.3e-08 62.4 46 58.7
TPR.G8544 Trifolium pratense HOM05D000144 ORTHO05D000392 1.3e-08 62.4 52 55.8
Gohir.D10G195800 Gossypium hirsutum HOM05D000144 ORTHO05D000392 1.6e-08 62.0 50 58.0
A04p29550 Brassica napus HOM05D000144 ORTHO05D000392 2.2e-08 61.6 54 53.7
BraA04t18420Z Brassica rapa HOM05D000144 ORTHO05D000392 2.2e-08 61.6 54 53.7
Potri.003G194500 Populus trichocarpa HOM05D000144 ORTHO05D000392 2.2e-08 61.6 48 60.4
TWI38G0426 Tripterygium wilfordii HOM05D000144 ORTHO05D000392 2.2e-08 61.6 47 55.3
Dinv44709 Davidia involucrata HOM05D000144 ORTHO05D000392 2.8e-08 61.2 44 61.4
Lsat_1_v5_gn_1_116521 Lactuca sativa HOM05D000144 ORTHO05D000392 2.8e-08 61.2 54 53.7
SGA_v2.0_scaffold124G33606 Striga asiatica HOM05D000144 ORTHO05D000392 2.8e-08 61.2 44 61.4
THA.LOC104824198 Tarenaya hassleriana HOM05D000144 ORTHO05D000392 2.8e-08 61.2 46 58.7
TAR636G3493 Trochodendron aralioides HOM05D000144 ORTHO05D000392 2.8e-08 61.2 44 61.4
FvH4_7g03600 Fragaria vesca HOM05D000144 ORTHO05D000392 3.7e-08 60.8 52 55.8
FAN03G0638 Fragaria x ananassa HOM05D000144 ORTHO05D000392 3.7e-08 60.8 52 55.8
FAN06G0535 Fragaria x ananassa HOM05D000144 ORTHO05D000392 3.7e-08 60.8 52 55.8
Gohir.D04G016300 Gossypium hirsutum HOM05D000144 ORTHO05D000392 3.7e-08 60.8 44 59.1
Gorai.012G019000 Gossypium raimondii HOM05D000144 ORTHO05D000392 3.7e-08 60.8 44 59.1
MD02G1278600 Malus domestica HOM05D000144 ORTHO05D000392 3.7e-08 60.8 50 58.0
MD07G1046700 Malus domestica HOM05D000144 ORTHO05D000392 3.7e-08 60.8 50 58.0
Sabra01G0021500 Salix brachista HOM05D000144 ORTHO05D000392 3.7e-08 60.8 43 60.5
Cpa.g.sc169.48 Carica papaya HOM05D000144 ORTHO05D000392 4.8e-08 60.5 44 59.1
Duzib106G2073 Durio zibethinus HOM05D000144 ORTHO05D000392 4.8e-08 60.5 48 56.2
Gohir.A05G399533 Gossypium hirsutum HOM05D000144 ORTHO05D000392 4.8e-08 60.5 44 59.1
Nn2g14736 Nelumbo nucifera HOM05D000144 ORTHO05D000392 4.8e-08 60.5 44 61.4
Actinidia06225 Actinidia chinensis HOM05D000144 ORTHO05D000392 6.3e-08 60.1 48 56.2
arahy.Tifrunner.gnm1.ann1.LWQ0WI Arachis hypogaea HOM05D000144 ORTHO05D000392 6.3e-08 60.1 53 52.8
Cfa010944 Carpinus fangiana HOM05D000144 ORTHO05D000392 6.3e-08 60.1 44 56.8
Haze_03003 Corylus avellana HOM05D000144 ORTHO05D000392 6.3e-08 60.1 44 56.8
Hma1.2p1_0837F.1_g226160 Hydrangea macrophylla HOM05D000144 ORTHO05D000392 6.3e-08 60.1 48 58.3
Potri.001G030000 Populus trichocarpa HOM05D000144 ORTHO05D000392 6.3e-08 60.1 43 60.5
Actinidia10148 Actinidia chinensis HOM05D000144 ORTHO05D000392 8.2e-08 59.7 48 56.2
COL.COLO4_20710 Corchorus olitorius HOM05D000144 ORTHO05D000392 8.2e-08 59.7 48 54.2
Gohir.A10G187700 Gossypium hirsutum HOM05D000144 ORTHO05D000392 8.2e-08 59.7 50 56.0
Gohir.A10G187900 Gossypium hirsutum HOM05D000144 ORTHO05D000392 8.2e-08 59.7 50 56.0
Gohir.A10G188300 Gossypium hirsutum HOM05D000144 ORTHO05D000392 8.2e-08 59.7 50 56.0
Gorai.011G218600 Gossypium raimondii HOM05D000144 ORTHO05D000392 8.2e-08 59.7 50 56.0
BcaC02g07450 Brassica carinata HOM05D000144 ORTHO05D000392 1.1e-07 59.3 44 59.1
ClCG05G026960 Citrullus lanatus HOM05D000144 ORTHO05D000392 1.1e-07 59.3 50 56.0
Lj1A755G22 Lonicera japonica HOM05D000144 ORTHO05D000392 1.1e-07 59.3 44 56.8
Manes.04G157000 Manihot esculenta HOM05D000144 ORTHO05D000392 1.1e-07 59.3 54 53.7
Pp3c11_4980 Physcomitrium patens HOM05D000144 ORTHO05D000392 1.1e-07 59.3 54 53.7
A05p07420 Brassica napus HOM05D000144 ORTHO05D000392 1.4e-07 58.9 51 52.9
BraA05t19708Z Brassica rapa HOM05D000144 ORTHO05D000392 1.4e-07 58.9 51 52.9
CDE02G4684 Ceratophyllum demersum HOM05D000144 ORTHO05D000392 1.4e-07 58.9 40 62.5
HanXRQChr11g0341781 Helianthus annuus HOM05D000144 ORTHO05D000392 1.4e-07 58.9 46 56.5
BcaB02g09150 Brassica carinata HOM05D000144 ORTHO05D000392 1.8e-07 58.5 50 54.0
CiPaw.14G009000 Carya illinoinensis HOM05D000144 ORTHO05D000392 1.8e-07 58.5 44 56.8
Lalb_Chr03g0032151 Lupinus albus HOM05D000144 ORTHO05D000392 1.8e-07 58.5 40 60.0
vmacro13764 Vaccinium macrocarpon HOM05D000144 ORTHO05D000392 1.8e-07 58.5 48 56.2
C04p08890 Brassica napus HOM05D000144 ORTHO05D000392 2.4e-07 58.2 51 52.9
BolC4t22477H Brassica oleracea HOM05D000144 ORTHO05D000392 2.4e-07 58.2 51 52.9
Glyma.09G090900 Glycine max HOM05D000144 ORTHO05D000392 2.4e-07 58.2 51 51.0
Glyma.13G193500 Glycine max HOM05D000144 ORTHO05D000392 2.4e-07 58.2 51 51.0
Medtr8g040180 Medicago truncatula HOM05D000144 ORTHO05D000392 2.4e-07 58.2 39 61.5
Phvul.011G203200 Phaseolus vulgaris HOM05D000144 ORTHO05D000392 2.4e-07 58.2 39 61.5
Psat4g100000 Pisum sativum HOM05D000144 ORTHO05D000392 2.4e-07 58.2 52 51.9
RcHm_v2.0_Chr1g0326221 Rosa chinensis HOM05D000144 ORTHO05D000392 2.4e-07 58.2 52 53.8
Sed0008196 Sechium edule HOM05D000144 ORTHO05D000392 2.4e-07 58.2 40 60.0
VMungo1127G2013 Vigna mungo HOM05D000144 ORTHO05D000392 2.4e-07 58.2 39 61.5
arahy.Tifrunner.gnm1.ann1.RN1SCF Arachis hypogaea HOM05D000144 ORTHO05D000392 3.1e-07 57.8 53 50.9
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 3.1e-07 57.8 50 56.0
BolC4t28186H Brassica oleracea HOM05D000144 ORTHO05D000392 3.1e-07 57.8 50 56.0
CANSAT56G1910 Cannabis sativa HOM05D000144 ORTHO05D000392 3.1e-07 57.8 39 61.5
Migut.B01241 Erythranthe guttata HOM05D000144 ORTHO05D000392 3.1e-07 57.8 44 59.1
Mapoly0114s0041 Marchantia polymorpha HOM05D000144 ORTHO05D000392 3.1e-07 57.8 39 61.5
Prupe.2G041900 Prunus persica HOM05D000144 ORTHO05D000392 3.1e-07 57.8 39 61.5
QL04p018836 Quercus lobata HOM05D000144 ORTHO05D000392 3.1e-07 57.8 48 56.2
SalBow5G1831 Salvia bowleyana HOM05D000144 ORTHO05D000392 3.1e-07 57.8 50 54.0
Zm00001eb212200 Zea mays HOM05D000144 ORTHO05D000392 3.1e-07 57.8 40 60.0
Aa31LG5G20970 Aethionema arabicum HOM05D000144 ORTHO05D000392 4.1e-07 57.4 43 58.1
AL4G36030 Arabidopsis lyrata HOM05D000144 ORTHO05D000392 4.1e-07 57.4 39 61.5
AT2G38730 Arabidopsis thaliana HOM05D000144 ORTHO05D000392 4.1e-07 57.4 39 61.5
Carub.0004s2073 Capsella rubella HOM05D000144 ORTHO05D000392 4.1e-07 57.4 39 61.5
MELO3C012489.2 Cucumis melo HOM05D000144 ORTHO05D000392 4.1e-07 57.4 50 54.0
CsaV3_5G036900 Cucumis sativus L. HOM05D000144 ORTHO05D000392 4.1e-07 57.4 50 54.0
ECA248G0196 Erigeron canadensis HOM05D000144 ORTHO05D000392 4.1e-07 57.4 39 61.5
PSO339G6513 Papaver somniferum HOM05D000144 ORTHO05D000392 4.1e-07 57.4 44 56.8
PSO384G3389 Papaver somniferum HOM05D000144 ORTHO05D000392 4.1e-07 57.4 44 56.8
Sp4g21090 Schrenkiella parvula HOM05D000144 ORTHO05D000392 4.1e-07 57.4 43 58.1
ATR1096G129 Amborella trichopoda HOM05D000144 ORTHO05D000392 5.3e-07 57.0 39 61.5
Ciclev10002356m.g Citrus clementina HOM05D000144 ORTHO05D000392 5.3e-07 57.0 48 52.1
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 6.9e-07 56.6 39 61.5
Os03g0811600 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D000392 6.9e-07 56.6 40 57.5
Sc10g0004530 Simmondsia chinensis HOM05D000144 ORTHO05D000392 6.9e-07 56.6 39 61.5
Atru.chr12.1290 Acer truncatum HOM05D000144 ORTHO05D000392 9.0e-07 56.2 39 59.0
MSTRG.20505 Avicennia marina HOM05D000144 ORTHO05D000392 9.0e-07 56.2 53 49.1
Duzib106G0745 Durio zibethinus HOM05D000144 ORTHO05D000392 9.0e-07 56.2 48 52.1
CARHR133420 Cardamine hirsuta HOM05D000144 ORTHO05D000392 1.2e-06 55.8 39 59.0
MBI13_g09227_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D000392 1.2e-06 55.8 56 50.0
Oeu064134.1 Olea europaea HOM05D000144 ORTHO05D000392 1.2e-06 55.8 52 50.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.5e-06 55.5 48 56.2
Nitab4.5_0003481g0100 Nicotiana tabacum HOM05D000144 ORTHO05D000392 1.5e-06 55.5 48 56.2
Rhsim07G0068500 Rhododendron simsii HOM05D000144 ORTHO05D000392 1.5e-06 55.5 54 48.1
AUR62032629 Chenopodium quinoa HOM05D000144 ORTHO05D000392 2.0e-06 55.1 39 59.0
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 2.0e-06 55.1 39 56.4
CBR_g18999 Chara braunii HOM05D000144 ORTHO05D000392 2.6e-06 54.7 39 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1601 Anthoceros agrestis HOM05D000144 ORTHO05D000392 3.4e-06 54.3 38 63.2
CSS0002112 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D000392 3.4e-06 54.3 47 55.3
Thhalv10017250m.g Eutrema salsugineum HOM05D000144 ORTHO05D000392 3.4e-06 54.3 39 59.0
AUR62031744 Chenopodium quinoa HOM05D000144 ORTHO05D000392 4.5e-06 53.9 52 46.2
Ah.10g030090 Amaranthus hybridus HOM05D000144 ORTHO05D000392 5.9e-06 53.5 39 59.0
SEGI_31342 Sequoiadendron giganteum HOM05D000144 ORTHO05D000392 5.9e-06 53.5 44 50.0
Solyc01g096520.3 Solanum lycopersicum HOM05D000144 ORTHO05D000392 5.9e-06 53.5 48 54.2
Sopen01g040250 Solanum pennellii HOM05D000144 ORTHO05D000392 5.9e-06 53.5 48 54.2
PGSC0003DMG400005406 Solanum tuberosum HOM05D000144 ORTHO05D000392 5.9e-06 53.5 48 54.2
CAN.G134.11 Capsicum annuum HOM05D000144 ORTHO05D000392 7.7e-06 53.1 48 54.2
SMO367G1282 Selaginella moellendorffii HOM05D000144 ORTHO05D000392 7.7e-06 53.1 39 59.0
Aqoxy2G00417 Aquilegia oxysepala HOM05D000144 ORTHO05D000392 1.0e-05 52.8 43 53.5


User provided reference genes

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