Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.0e-78 296.6 142 100.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.8e-68 261.2 142 84.5
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 3.3e-53 211.8 137 70.1
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 4.4e-37 158.3 137 55.5
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 3.5e-34 148.7 138 51.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 5.2e-30 134.8 131 49.6
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 7.5e-29 131.0 131 49.6
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 4.5e-26 121.7 136 45.6
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.5e-26 121.7 131 45.8
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.0e-25 120.6 136 44.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.7e-25 119.8 145 42.8
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.2e-25 119.4 136 44.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 5.0e-25 118.2 136 44.1
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 6.5e-25 117.9 136 43.4
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.5e-25 117.5 134 42.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-24 117.1 136 44.1
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.1e-24 117.1 136 44.9
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.1e-24 117.1 136 44.9
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-24 117.1 136 41.2
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-24 117.1 136 41.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-24 116.7 136 41.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.9e-24 116.3 136 43.4
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.9e-24 116.3 136 41.2
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.9e-24 116.3 136 44.9
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 2.5e-24 115.9 136 41.2
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.5e-24 115.9 136 41.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.2e-24 115.5 136 43.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.2e-24 115.5 136 43.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.2e-24 115.5 136 43.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 3.2e-24 115.5 136 41.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.2e-24 115.2 138 43.5
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 9.4e-24 114.0 136 42.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 9.4e-24 114.0 136 41.9
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.4e-24 114.0 136 44.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.2e-23 113.6 138 42.0
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.6e-23 113.2 136 41.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-23 113.2 136 40.4
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.6e-23 113.2 136 40.4
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.6e-23 113.2 136 41.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.1e-23 112.8 126 44.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.1e-23 112.8 126 44.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.1e-23 112.8 126 44.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.1e-23 112.8 136 40.4
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.1e-23 112.8 136 40.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.7e-23 112.5 136 40.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-23 112.5 136 39.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.7e-23 112.5 136 39.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.6e-23 112.1 136 39.7
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.6e-23 112.1 136 44.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 4.7e-23 111.7 145 40.7
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.7e-23 111.7 135 41.5
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.7e-23 111.7 136 39.7
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.7e-23 111.7 136 39.7
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 6.1e-23 111.3 134 42.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 6.1e-23 111.3 135 40.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 8.0e-23 110.9 136 38.2
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 8.0e-23 110.9 136 38.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.0e-22 110.5 134 41.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.4e-22 110.2 136 37.5
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.8e-22 109.8 136 43.4
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.8e-22 109.8 137 40.9
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.0e-22 109.0 134 38.8
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 4.0e-22 108.6 126 42.9
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 4.0e-22 108.6 136 39.0
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 5.2e-22 108.2 107 46.7
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 5.2e-22 108.2 136 37.5
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 6.8e-22 107.8 153 39.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.8e-22 107.8 106 46.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.8e-22 107.5 106 46.2
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.8e-22 107.5 130 41.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 8.8e-22 107.5 136 41.2
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.2e-21 107.1 136 41.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.5e-21 106.7 136 39.0
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-21 106.7 106 46.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-21 106.7 106 46.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.0e-21 106.3 136 39.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.4e-21 105.5 134 40.3
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.4e-21 105.5 132 38.6
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 4.4e-21 105.1 138 38.4
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.4e-21 105.1 134 38.8
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 5.7e-21 104.8 107 47.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 7.5e-21 104.4 126 40.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 9.8e-21 104.0 136 40.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 9.8e-21 104.0 136 37.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.3e-20 103.6 130 38.5
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.3e-20 103.6 131 40.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.7e-20 103.2 107 46.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.7e-20 103.2 128 48.4
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.2e-20 102.8 131 40.5
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 2.2e-20 102.8 133 42.9
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.8e-20 102.4 122 41.8
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 2.8e-20 102.4 107 43.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.7e-20 102.1 134 39.6
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 3.7e-20 102.1 136 39.0
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 3.7e-20 102.1 136 38.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 8.3e-20 100.9 136 37.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.1e-19 100.5 135 37.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.1e-19 100.5 122 42.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.1e-19 100.5 131 39.7
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.1e-19 100.5 126 38.9
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.4e-19 100.1 106 43.4
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.4e-19 100.1 136 37.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.4e-19 100.1 136 37.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.4e-19 99.4 137 38.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 4.1e-19 98.6 134 37.3
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.0e-19 97.8 131 39.7
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.2e-18 97.1 137 36.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.0e-17 94.0 141 39.7
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.3e-17 93.6 136 41.9
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 2.3e-17 92.8 136 42.6
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.9e-17 92.4 131 40.5
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.6e-17 90.9 134 38.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.6e-17 90.9 134 38.8
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.5e-16 89.4 126 39.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.2e-16 87.8 115 42.6
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.2e-15 87.0 109 39.4
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.6e-15 86.7 118 40.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 3.6e-15 85.5 134 35.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 4.7e-15 85.1 134 35.1
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-14 83.2 139 34.5
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 6.8e-14 81.3 134 34.3
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.5e-13 80.1 115 38.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.5e-13 80.1 136 33.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.6e-13 79.3 139 33.1
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-13 78.6 95 43.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.7e-13 78.2 95 43.2
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 5.7e-13 78.2 106 38.7
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 7.5e-13 77.8 95 42.1
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 7.5e-13 77.8 196 26.5
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-11 73.9 95 41.1
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 5.4e-11 71.6 81 40.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.2e-10 70.5 91 39.6
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.5e-10 68.9 59 55.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.0e-09 67.4 89 39.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 8.6e-09 64.3 80 37.5
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.9e-08 63.2 80 33.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.6e-07 60.1 83 33.7


User provided reference genes

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