Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.7e-264 913.7 459 100.0
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.7e-93 346.3 310 58.7
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-55 221.9 313 39.6
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-52 211.5 295 40.3
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.5e-38 162.5 284 32.4
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.5e-38 162.5 272 32.7
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.5e-38 162.5 272 32.7
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 5.6e-25 119.8 268 30.6
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.4e-23 115.2 314 28.3
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.8e-23 114.8 312 29.2
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.3e-23 114.4 271 31.0
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 3.0e-23 114.0 287 31.4
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.8e-23 112.8 298 29.5
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.8e-23 112.8 296 29.4
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.8e-23 112.8 300 29.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.2e-22 112.1 267 31.1
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.6e-22 110.9 286 28.7
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.6e-22 110.9 284 29.2
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.6e-22 110.9 294 28.9
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 3.4e-22 110.5 269 29.0
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 3.4e-22 110.5 324 28.1
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 4.4e-22 110.2 260 31.5
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 5.8e-22 109.8 261 29.9
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.8e-22 109.8 298 29.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.8e-22 109.8 261 31.4
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 7.5e-22 109.4 260 31.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 7.5e-22 109.4 278 31.3
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 7.5e-22 109.4 241 31.5
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 9.8e-22 109.0 288 28.8
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.3e-21 108.6 307 29.3
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 2.2e-21 107.8 262 28.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.9e-21 106.7 308 27.6
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.9e-20 104.8 288 28.5
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.4e-20 104.4 322 26.4
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.4e-20 103.2 262 30.5
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 7.0e-20 102.8 286 28.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 7.0e-20 102.8 286 28.7
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 9.2e-20 102.4 260 29.6
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 9.2e-20 102.4 291 28.5
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.6e-19 101.7 261 28.7
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 2.0e-19 101.3 284 28.2
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.7e-19 100.9 238 29.8
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 3.5e-19 100.5 296 27.4
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 4.6e-19 100.1 264 29.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.0e-19 99.8 278 28.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.0e-18 99.0 249 29.7
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.3e-18 98.6 308 26.0
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.3e-18 98.6 272 28.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.7e-18 98.2 263 27.8
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 8.6e-18 95.9 263 30.4
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 2.5e-17 94.4 311 27.0
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 3.3e-17 94.0 265 27.5
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 3.3e-17 94.0 292 28.1
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 3.3e-17 94.0 230 30.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 4.3e-17 93.6 312 25.3
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 5.6e-17 93.2 279 29.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 2.8e-16 90.9 292 27.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 6.2e-16 89.7 264 28.0
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 8.0e-16 89.4 241 27.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 8.0e-16 89.4 241 27.8
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 1.1e-15 89.0 285 26.3
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.1e-15 89.0 272 26.1
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 1.4e-15 88.6 231 28.1
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.4e-15 88.6 291 27.5
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.8e-15 88.2 297 26.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.3e-15 87.8 292 27.4
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.1e-15 87.4 252 28.2
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 4.0e-15 87.0 303 26.4
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 5.2e-15 86.7 306 25.5
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 5.2e-15 86.7 264 28.4
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 6.8e-15 86.3 257 24.1
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 6.8e-15 86.3 281 24.2
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 8.9e-15 85.9 264 28.4
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 8.9e-15 85.9 281 24.2
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.2e-14 85.5 272 25.4
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.5e-14 85.1 290 26.6
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.5e-14 85.1 253 27.7
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 2.0e-14 84.7 265 27.5
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 4.4e-14 83.6 272 24.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 5.8e-14 83.2 361 24.9
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 5.8e-14 83.2 257 24.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 7.5e-14 82.8 241 28.6
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 7.5e-14 82.8 286 26.2
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 7.5e-14 82.8 309 24.9
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 9.8e-14 82.4 265 26.0
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 9.8e-14 82.4 297 26.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.3e-13 82.0 247 26.7
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.7e-13 81.6 347 26.8
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 2.2e-13 81.3 258 26.4
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.2e-13 81.3 247 25.9
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 2.2e-13 81.3 259 27.4
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 2.9e-13 80.9 253 26.9
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.9e-13 80.9 257 24.5
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.1e-12 79.0 257 23.3
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.1e-12 79.0 257 23.3
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.4e-12 77.8 251 24.3
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 4.1e-12 77.0 309 25.2
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 4.1e-12 77.0 257 23.0
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.4e-12 76.6 256 26.6
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 5.4e-12 76.6 236 27.1
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 7.0e-12 76.3 306 24.2
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 9.2e-12 75.9 305 25.6
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 9.2e-12 75.9 299 25.8
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 9.2e-12 75.9 303 25.1
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.2e-11 75.5 303 23.1
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.6e-11 75.1 243 25.9
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.6e-11 75.1 223 25.6
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 2.1e-11 74.7 264 25.8
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.1e-11 74.7 321 25.9
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 3.5e-11 73.9 316 25.9
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 4.6e-11 73.6 300 25.7
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 4.6e-11 73.6 309 25.6
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.0e-10 72.4 306 25.5
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.0e-10 72.4 255 25.5
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 6.6e-10 69.7 265 24.9
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.6e-10 69.7 251 23.5
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.6e-10 69.7 251 23.5
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 8.6e-10 69.3 252 26.2
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.5e-09 67.8 248 23.0
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 3.3e-09 67.4 244 29.9
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 4.3e-09 67.0 223 24.2
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 5.6e-09 66.6 148 33.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 5.6e-09 66.6 248 23.4
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 1.2e-08 65.5 321 24.0
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.1e-08 64.7 212 24.5
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 2.1e-08 64.7 101 34.7
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.1e-08 64.7 320 24.1
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 2.8e-08 64.3 102 33.3
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 2.8e-08 64.3 101 34.7
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 6.2e-08 63.2 111 29.7
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 6.2e-08 63.2 204 26.0
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 8.1e-08 62.8 243 26.3
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 8.1e-08 62.8 209 27.8
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 2.3e-07 61.2 202 27.2
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.2e-06 58.9 117 29.1
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.6e-06 57.8 212 25.0
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 3.4e-06 57.4 240 23.8


User provided reference genes

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