Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.1e-75 283.9 146 100.0
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.4e-54 216.5 133 81.2
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.1e-41 171.4 133 66.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.3e-40 168.3 133 66.2
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.8e-39 165.6 137 64.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 6.3e-39 164.5 134 64.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.1e-38 163.7 138 61.6
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.4e-38 162.5 138 62.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.1e-38 162.2 138 61.6
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.1e-38 162.2 138 62.3
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.1e-38 161.8 130 64.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 5.3e-38 161.4 138 62.3
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 5.3e-38 161.4 138 61.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.9e-38 161.0 138 61.6
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.0e-37 159.5 151 60.3
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.0e-37 159.5 147 59.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.6e-37 159.1 132 62.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-37 159.1 146 56.8
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.6e-37 159.1 138 59.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.4e-37 158.7 139 61.2
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.5e-37 158.3 139 60.4
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.5e-37 158.3 137 59.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.5e-37 158.3 137 59.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.5e-37 158.3 136 60.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 5.9e-37 157.9 135 62.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.7e-37 157.5 137 59.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.0e-36 157.1 138 59.4
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.3e-36 156.8 130 63.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.3e-36 156.8 134 59.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.3e-36 156.8 150 58.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.3e-36 156.8 138 59.4
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.3e-36 156.8 138 59.4
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.7e-36 156.4 140 58.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.7e-36 156.4 128 62.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.2e-36 156.0 138 59.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.2e-36 156.0 137 59.1
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.2e-36 156.0 137 58.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.9e-36 155.6 139 59.7
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 5.0e-36 154.8 137 59.1
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.0e-36 154.8 138 59.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 5.0e-36 154.8 132 59.1
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.1e-35 153.7 138 58.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.1e-35 153.7 138 58.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.4e-35 153.3 138 59.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.4e-35 153.3 137 57.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.5e-35 152.5 133 59.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.5e-35 152.5 135 59.3
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.5e-35 152.5 134 61.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 3.2e-35 152.1 134 59.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.2e-35 152.1 140 57.1
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.2e-35 152.1 135 58.5
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.2e-35 152.1 138 58.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.2e-35 151.8 133 60.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 5.5e-35 151.4 138 58.0
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.5e-35 151.4 133 58.6
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.5e-35 151.4 138 59.4
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 7.2e-35 151.0 139 61.2
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 9.4e-35 150.6 138 57.2
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.2e-34 150.2 139 56.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.2e-34 150.2 133 61.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.6e-34 149.8 133 60.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.1e-34 149.4 121 62.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.1e-34 149.4 136 58.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.6e-34 148.7 133 60.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.6e-34 148.3 123 61.8
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 7.9e-34 147.5 130 59.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-33 147.1 131 58.0
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-33 146.7 130 56.9
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.0e-33 145.6 139 59.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 6.7e-33 144.4 133 55.6
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.7e-33 144.4 133 58.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-32 143.3 129 57.4
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.5e-32 142.5 139 58.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 4.3e-32 141.7 133 57.1
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.3e-32 141.7 119 63.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 5.7e-32 141.4 140 56.4
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 9.7e-32 140.6 113 65.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 9.7e-32 140.6 128 58.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.3e-31 140.2 130 56.9
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-31 139.8 124 57.3
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.1e-30 137.1 173 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.1e-30 135.2 130 55.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.9e-30 134.4 134 54.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-29 133.7 133 53.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-29 133.7 133 54.1
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.2e-29 133.7 132 56.8
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.2e-28 129.4 136 56.6
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.4e-27 126.7 196 42.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.2e-27 124.4 198 39.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.1e-26 122.9 122 52.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.6e-26 122.1 122 51.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.6e-26 122.1 133 50.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.6e-26 122.1 122 51.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 6.1e-26 121.3 122 51.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.1e-26 121.3 122 50.8
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-25 120.2 122 53.3
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.3e-25 119.4 122 50.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.0e-25 119.0 122 51.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 8.8e-25 117.5 134 50.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-24 116.7 134 50.7
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.3e-24 115.5 122 50.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.4e-24 115.2 122 49.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.7e-23 112.1 121 47.9
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.7e-23 112.1 121 47.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-22 110.2 117 50.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-22 109.8 136 48.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.1e-22 108.6 156 46.8
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.1e-22 107.5 133 48.1
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 5.9e-21 104.8 126 47.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.8e-20 102.1 105 50.5
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 5.5e-19 98.2 130 43.1
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 5.5e-19 98.2 130 43.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.1e-18 96.3 132 40.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.7e-18 95.9 122 45.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.6e-18 95.5 121 46.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.4e-17 93.6 121 45.5
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.8e-17 93.2 121 45.5
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.3e-17 92.8 81 58.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.9e-17 92.0 122 41.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 5.2e-17 91.7 105 46.7
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.3e-16 89.0 84 57.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 5.7e-16 88.2 82 56.1
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 7.4e-16 87.8 124 41.9
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.3e-15 87.0 81 58.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.2e-15 86.3 134 42.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.7e-15 85.5 122 40.2
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.7e-15 85.5 84 50.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.8e-15 85.1 122 39.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.8e-15 85.1 77 55.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.4e-14 83.6 90 48.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.8e-14 83.2 133 38.3
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.1e-14 82.4 73 56.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.3e-14 81.6 57 71.9
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-13 80.5 88 46.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.6e-13 79.3 121 39.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-12 77.4 57 66.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.0e-12 77.4 57 70.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.3e-12 77.0 65 60.0
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 6.5e-12 74.7 73 50.7
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.5e-11 72.8 52 69.2
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 4.2e-11 72.0 57 64.9
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 7.2e-11 71.2 103 36.9
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.1e-10 69.7 83 45.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 8.2e-07 57.8 41 65.9


User provided reference genes

Program Settings