Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 0.0e+00 1113.2 556 100.0
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-273 945.7 551 85.5
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.1e-259 897.5 560 81.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-232 809.7 559 74.8
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.9e-182 642.1 485 65.6
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-141 507.3 381 64.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.0e-134 482.6 447 53.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 6.5e-129 465.3 443 53.0
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.2e-103 381.3 437 46.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.6e-103 380.9 438 47.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.1e-102 376.7 432 45.1
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.8e-102 375.6 441 44.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 6.8e-102 375.6 434 45.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.9e-102 375.2 441 44.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-101 374.8 448 44.4
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-101 373.6 441 43.8
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.4e-101 372.9 448 44.4
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 9.8e-101 371.7 443 44.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-100 371.3 448 44.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.3e-100 371.3 433 44.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.3e-100 371.3 504 40.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.9e-100 370.2 490 43.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.1e-99 368.2 438 44.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.4e-99 367.9 498 41.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.4e-99 367.9 485 42.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.2e-99 366.7 489 41.9
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.4e-99 365.9 492 40.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.4e-99 365.9 488 41.8
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.4e-99 365.9 466 42.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.2e-99 365.2 434 44.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 9.2e-99 365.2 458 42.8
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.2e-98 364.8 432 44.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.7e-98 363.6 492 42.5
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.7e-98 363.6 451 42.8
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.0e-98 362.5 435 43.0
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.0e-98 362.5 488 41.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 7.8e-98 362.1 431 44.8
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.3e-97 361.3 457 42.5
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.7e-97 360.9 447 43.8
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.7e-97 360.9 444 43.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.3e-97 360.5 446 44.6
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.3e-97 360.5 452 42.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.9e-97 359.8 437 43.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.6e-97 358.6 437 43.7
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.6e-97 358.6 487 40.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-96 358.2 486 41.6
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-96 357.5 419 43.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.9e-96 357.5 488 40.8
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.5e-96 357.1 442 43.4
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.5e-96 357.1 432 43.3
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.5e-96 357.1 492 41.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.3e-96 356.7 434 43.1
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.3e-96 356.7 486 41.6
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.6e-96 355.9 480 42.7
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.6e-96 355.9 437 46.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 7.3e-96 355.5 437 42.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.5e-96 355.1 480 41.9
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.2e-95 354.8 432 43.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.2e-95 354.8 487 41.5
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.6e-95 354.4 487 41.3
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.6e-95 354.4 498 39.6
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.6e-95 354.4 459 41.0
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.1e-95 354.0 436 42.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.8e-95 353.6 438 41.8
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.6e-95 353.2 437 42.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.6e-95 353.2 494 41.9
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.6e-95 353.2 487 40.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.7e-95 352.8 500 39.0
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.4e-94 351.3 435 41.6
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.8e-94 350.9 487 41.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.8e-94 350.9 486 41.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.3e-94 350.5 487 40.7
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 6.8e-94 349.0 453 41.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.4e-93 346.7 448 43.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.4e-93 346.3 427 42.4
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 5.8e-93 345.9 434 44.7
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.9e-93 345.1 450 42.9
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.9e-93 345.1 447 44.1
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.3e-92 344.7 438 43.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.7e-92 343.2 480 41.5
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.9e-92 342.8 436 42.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.9e-92 342.8 434 41.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-91 339.7 435 43.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 4.1e-91 339.7 443 41.8
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 7.1e-91 339.0 436 41.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 7.1e-91 339.0 442 41.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.6e-90 336.3 481 40.5
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-89 335.1 430 41.9
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.3e-89 334.0 489 40.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-89 333.6 430 41.2
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.0e-89 333.6 434 42.4
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.9e-89 333.2 434 41.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 8.6e-89 332.0 430 41.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-88 331.6 481 39.3
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-88 331.6 430 40.9
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.5e-88 331.3 489 39.1
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.5e-88 330.5 436 43.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 3.3e-88 330.1 453 40.4
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.6e-88 329.3 430 41.6
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.2e-87 328.2 486 39.9
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.6e-87 327.8 454 38.5
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-87 327.8 434 38.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.1e-87 327.4 430 41.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.7e-87 326.2 453 40.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.7e-87 326.2 430 40.9
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 6.2e-87 325.9 478 38.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.1e-87 325.5 431 40.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 8.1e-87 325.5 442 40.7
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.4e-86 324.7 442 41.0
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-86 323.2 449 40.3
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.2e-85 321.6 434 41.9
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.5e-85 321.2 424 42.0
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-85 320.1 430 41.4
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.4e-85 320.1 445 38.7
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 4.4e-85 319.7 448 40.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 7.6e-85 318.9 430 41.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.9e-85 318.5 439 39.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.3e-84 318.2 427 40.7
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.4e-84 315.8 480 39.6
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-83 315.1 457 36.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 2.4e-83 313.9 446 39.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.1e-83 313.2 428 39.0
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 7.1e-83 312.4 452 39.6
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 9.2e-83 312.0 436 39.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-82 311.6 480 37.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-82 310.5 430 40.2
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.7e-82 310.5 430 40.2
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 6.0e-82 309.3 431 40.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 6.0e-82 309.3 427 38.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.0e-82 309.3 481 36.0
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.3e-81 308.1 444 39.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.3e-81 308.1 437 38.9
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-81 307.0 433 38.3
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.9e-81 306.6 434 39.4
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.9e-81 306.6 426 39.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 5.1e-81 306.2 434 38.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 5.1e-81 306.2 438 39.7
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 5.1e-81 306.2 434 38.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-81 305.8 433 38.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-80 304.3 433 37.9
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.3e-80 303.5 444 38.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 4.3e-80 303.1 433 38.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.6e-80 302.8 453 37.7
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 9.6e-80 302.0 427 38.4
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 9.6e-80 302.0 427 38.4
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 9.6e-80 302.0 404 41.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.4e-78 298.1 424 37.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.8e-78 297.7 470 36.2
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.6e-77 292.4 433 37.9
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-75 288.1 373 43.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-75 288.1 373 43.2
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.2e-74 285.0 429 35.2
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.1e-74 284.3 433 35.1
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-52 212.2 312 39.7
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-50 205.3 434 32.0
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 9.7e-48 195.7 280 38.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.7e-40 169.9 232 40.1
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 7.4e-40 169.5 222 44.6
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-39 168.3 222 44.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-33 147.5 180 45.6
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.7e-31 140.6 185 38.9
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.1e-30 137.5 159 44.7
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 3.9e-25 120.6 173 39.9
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.7e-18 97.8 335 25.4
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.9e-12 77.8 72 55.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.8e-12 77.4 147 32.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 7.2e-11 73.2 72 52.8
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.3e-09 68.2 74 51.4
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 6.3e-07 60.1 70 38.6
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 8.3e-07 59.7 51 51.0


User provided reference genes

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