Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 4.7e-126 454.5 226 100.0
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 2.5e-63 246.1 217 56.7
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 4.8e-62 241.9 223 54.3
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 8.1e-62 241.1 225 55.6
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 1.8e-61 240.0 221 56.6
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 2.4e-61 239.6 221 56.6
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 6.9e-61 238.0 220 56.8
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 2.6e-60 236.1 218 55.0
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 3.4e-60 235.7 221 54.8
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.8e-60 235.0 221 55.2
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 7.6e-60 234.6 221 56.6
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 7.6e-60 234.6 220 55.5
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 7.6e-60 234.6 221 55.2
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 1.7e-59 233.4 218 56.0
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.7e-59 233.4 221 54.3
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 2.2e-59 233.0 221 54.3
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 4.9e-59 231.9 217 53.9
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 4.9e-59 231.9 227 53.7
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 6.5e-59 231.5 218 55.0
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 6.5e-59 231.5 219 53.4
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 8.4e-59 231.1 216 54.6
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 8.4e-59 231.1 226 53.1
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 8.4e-59 231.1 214 57.5
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 8.4e-59 231.1 218 54.1
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.4e-58 230.3 217 53.9
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.4e-58 230.3 217 54.8
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.9e-58 229.9 220 55.5
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 1.9e-58 229.9 217 53.5
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 2.5e-58 229.6 215 55.3
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.5e-58 229.6 225 55.1
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 3.2e-58 229.2 217 54.4
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 4.2e-58 228.8 225 54.7
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 4.2e-58 228.8 215 55.3
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 4.2e-58 228.8 226 53.5
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 5.5e-58 228.4 219 55.3
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 5.5e-58 228.4 227 54.6
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 7.1e-58 228.0 221 53.8
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 7.1e-58 228.0 219 54.8
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 9.3e-58 227.6 214 55.6
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.2e-57 227.3 214 55.6
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 1.2e-57 227.3 215 54.4
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.6e-57 226.9 217 53.5
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 2.1e-57 226.5 218 53.7
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 2.7e-57 226.1 221 52.5
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 2.7e-57 226.1 218 54.6
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 3.5e-57 225.7 221 52.5
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 3.5e-57 225.7 217 54.8
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 4.6e-57 225.3 217 55.3
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 6.0e-57 224.9 214 56.5
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 6.0e-57 224.9 221 53.4
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.0e-56 224.2 217 54.4
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 1.0e-56 224.2 211 55.9
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.3e-56 223.8 221 53.4
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.3e-56 223.8 217 54.8
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 2.3e-56 223.0 223 54.7
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 2.3e-56 223.0 225 53.8
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 3.9e-56 222.2 221 51.6
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 3.9e-56 222.2 221 52.9
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 5.1e-56 221.9 223 55.6
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 5.1e-56 221.9 214 54.2
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 6.7e-56 221.5 221 53.8
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 8.7e-56 221.1 225 52.4
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 8.7e-56 221.1 202 55.9
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 1.1e-55 220.7 219 53.9
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 1.9e-55 219.9 214 52.3
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 2.5e-55 219.5 214 55.6
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 2.5e-55 219.5 214 55.6
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 3.3e-55 219.2 224 51.8
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 3.3e-55 219.2 214 55.6
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 5.7e-55 218.4 218 54.1
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.3e-54 217.2 242 48.8
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 1.6e-54 216.9 214 55.1
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 3.7e-54 215.7 214 54.7
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 3.7e-54 215.7 209 55.5
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 3.7e-54 215.7 233 50.6
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 3.7e-54 215.7 215 52.1
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 4.8e-54 215.3 221 52.0
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 6.3e-54 214.9 221 50.2
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 6.3e-54 214.9 197 57.9
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 1.4e-53 213.8 228 50.0
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 3.1e-53 212.6 208 55.3
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 6.9e-53 211.5 220 52.7
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 1.2e-52 210.7 241 50.6
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 4.5e-52 208.8 210 52.9
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 2.2e-51 206.5 224 48.2
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 2.9e-51 206.1 218 49.5
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 2.5e-50 203.0 216 50.0
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.5e-50 203.0 214 50.9
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 5.5e-50 201.8 216 49.5
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 7.2e-50 201.4 255 44.7
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 3.9e-48 195.7 223 50.7
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 6.7e-48 194.9 257 45.9
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.9e-47 193.4 217 47.9
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 3.3e-47 192.6 241 45.2
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 5.7e-47 191.8 192 54.7
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.6e-46 190.3 176 56.2
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 1.5e-44 183.7 201 49.3
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 2.2e-43 179.9 206 47.6
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.5e-43 178.3 216 46.8
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 5.5e-42 175.3 218 43.1
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 3.0e-40 169.5 154 56.5
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.1e-39 167.5 269 40.9
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 4.3e-39 165.6 146 55.5
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 2.8e-38 162.9 143 56.6
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.2e-36 157.5 140 55.0
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.3e-35 154.1 143 52.4
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 9.4e-34 147.9 140 55.0
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 1.3e-30 137.5 381 29.7
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 5.5e-26 122.1 201 39.8
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 9.4e-26 121.3 195 39.5
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.6e-25 119.4 103 57.3
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 2.4e-21 106.7 84 58.3
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.1e-21 106.3 85 61.2
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 5.7e-15 85.5 210 31.9
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 8.3e-14 81.6 64 57.8
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 5.4e-13 79.0 100 43.0
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.0e-12 77.0 146 36.3
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 1.5e-10 70.9 129 39.5
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 3.2e-10 69.7 51 62.7
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 7.2e-10 68.6 59 59.3
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.1e-09 67.0 63 58.7
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 3.0e-08 63.2 54 55.6
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 2.8e-06 56.6 57 52.6
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 2.8e-06 56.6 58 44.8


User provided reference genes

Program Settings