Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 5.9e-104 380.9 201 100.0
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 5.9e-64 248.1 206 72.3
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 8.1e-29 131.3 130 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 1.5e-27 127.1 115 57.4
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 8.4e-26 121.3 105 61.0
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.8e-20 103.6 98 60.2
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 4.0e-20 102.4 97 61.9
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 5.3e-20 102.1 92 67.4
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 5.3e-20 102.1 92 67.4
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 6.9e-20 101.7 86 55.8
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 6.9e-20 101.7 92 69.6
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 6.9e-20 101.7 92 69.6
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.2e-19 100.9 92 67.4
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.2e-19 100.9 97 60.8
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 1.2e-19 100.9 97 60.8
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.5e-19 100.5 102 59.8
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.5e-19 100.5 95 63.2
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 2.0e-19 100.1 84 63.1
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 2.0e-19 100.1 92 66.3
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 2.0e-19 100.1 92 66.3
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 2.0e-19 100.1 105 60.0
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 2.0e-19 100.1 105 60.0
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 2.6e-19 99.8 92 66.3
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.6e-19 99.8 92 66.3
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 2.6e-19 99.8 84 70.2
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 2.6e-19 99.8 84 66.7
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.6e-19 99.8 80 72.5
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 2.6e-19 99.8 84 69.0
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 4.4e-19 99.0 80 70.0
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 4.4e-19 99.0 80 72.5
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.4e-19 99.0 95 62.1
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 4.4e-19 99.0 80 68.8
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 9.9e-19 97.8 80 68.8
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 9.9e-19 97.8 84 60.7
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 9.9e-19 97.8 80 71.2
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 9.9e-19 97.8 80 71.2
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 9.9e-19 97.8 79 73.4
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 9.9e-19 97.8 84 66.7
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.3e-18 97.4 111 55.0
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 1.7e-18 97.1 111 55.0
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.7e-18 97.1 111 55.0
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 1.7e-18 97.1 111 55.0
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 1.7e-18 97.1 111 55.0
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.7e-18 97.1 111 55.0
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 1.7e-18 97.1 84 66.7
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 2.2e-18 96.7 93 59.1
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 2.9e-18 96.3 92 58.7
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 2.9e-18 96.3 92 58.7
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 2.9e-18 96.3 96 54.2
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 3.8e-18 95.9 84 66.7
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 3.8e-18 95.9 84 63.1
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 4.9e-18 95.5 65 64.6
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 4.9e-18 95.5 95 61.1
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 6.4e-18 95.1 102 55.9
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 6.4e-18 95.1 84 58.3
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 8.4e-18 94.7 80 66.2
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 8.4e-18 94.7 78 55.1
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 8.4e-18 94.7 80 70.0
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.1e-17 94.4 84 51.2
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 1.4e-17 94.0 84 64.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 1.4e-17 94.0 101 53.5
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.4e-17 94.0 84 58.3
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.4e-17 94.0 80 70.0
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.4e-17 94.0 95 61.1
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.4e-17 94.0 95 61.1
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.9e-17 93.6 102 53.9
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 1.9e-17 93.6 80 67.5
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 2.4e-17 93.2 105 55.2
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.2e-17 92.8 78 53.8
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 3.2e-17 92.8 78 53.8
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 3.2e-17 92.8 80 68.8
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 3.2e-17 92.8 65 63.1
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 3.2e-17 92.8 85 52.9
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 4.2e-17 92.4 84 65.5
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 4.2e-17 92.4 84 65.5
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 4.2e-17 92.4 84 65.5
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 4.2e-17 92.4 80 68.8
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 4.2e-17 92.4 84 63.1
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 4.2e-17 92.4 65 63.1
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 9.3e-17 91.3 80 67.5
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.2e-16 90.9 80 62.5
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 1.6e-16 90.5 95 60.0
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 3.5e-16 89.4 65 63.1
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 4.6e-16 89.0 69 72.5
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 1.7e-15 87.0 61 62.3
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.9e-14 83.6 80 66.2
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.9e-14 83.6 80 66.2
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 5.8e-11 72.0 40 72.5
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 1.7e-10 70.5 88 55.7
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 3.2e-09 66.2 164 29.3
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 4.6e-08 62.4 74 47.3
Cre03.g201050 Chlamydomonas reinhardtii HOM05D007375 ORTHO05D009293 1.5e-06 57.4 68 44.1


User provided reference genes

Program Settings