Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_22960 Physcomitrium patens HOM05D002688 ORTHO05D002911 1.2e-67 259.6 118 100.0
Pp3c19_12220 Physcomitrium patens HOM05D002688 ORTHO05D002911 1.0e-23 113.6 104 54.8
Mapoly0110s0031 Marchantia polymorpha HOM05D002688 ORTHO05D002911 5.1e-23 111.3 104 53.8
Mapoly0120s0031 Marchantia polymorpha HOM05D002688 ORTHO05D002911 5.1e-23 111.3 104 53.8
Pp3c22_16090 Physcomitrium patens HOM05D002688 ORTHO05D002911 1.4e-20 103.2 91 57.1
SEGI_29949 Sequoiadendron giganteum HOM05D002688 ORTHO05D002911 4.9e-18 94.7 90 51.1
Oeu027367.2 Olea europaea HOM05D002688 ORTHO05D002911 4.2e-17 91.7 89 49.4
CANSAT80G0975 Cannabis sativa HOM05D002688 ORTHO05D002911 5.4e-17 91.3 96 50.0
Cfa010823 Carpinus fangiana HOM05D002688 ORTHO05D002911 5.4e-17 91.3 91 50.5
MD07G1022400 Malus domestica HOM05D002688 ORTHO05D002911 1.2e-16 90.1 97 46.4
Potri.001G261000 Populus trichocarpa HOM05D002688 ORTHO05D002911 1.2e-16 90.1 94 50.0
GSVIVG01001439001 Vitis vinifera HOM05D002688 ORTHO05D002911 1.6e-16 89.7 99 48.5
FAN01G1665 Fragaria x ananassa HOM05D002688 ORTHO05D002911 4.6e-16 88.2 89 47.2
Glyma.09G226600 Glycine max HOM05D002688 ORTHO05D002911 4.6e-16 88.2 88 50.0
FAN10G3609 Fragaria x ananassa HOM05D002688 ORTHO05D002911 6.0e-16 87.8 89 46.1
MD02G1301500 Malus domestica HOM05D002688 ORTHO05D002911 6.0e-16 87.8 93 46.2
AUR62009425 Chenopodium quinoa HOM05D002688 ORTHO05D002911 7.9e-16 87.4 97 42.3
Phvul.011G010500 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 7.9e-16 87.4 88 51.1
RcHm_v2.0_Chr1g0318181 Rosa chinensis HOM05D002688 ORTHO05D002911 7.9e-16 87.4 89 46.1
Glyma.12G010200 Glycine max HOM05D002688 ORTHO05D002911 1.0e-15 87.0 88 50.0
CiPaw.14G003800 Carya illinoinensis HOM05D002688 ORTHO05D002911 1.3e-15 86.7 98 46.9
VMungo1127G1560 Vigna mungo HOM05D002688 ORTHO05D002911 1.3e-15 86.7 88 50.0
ATR0680G068 Amborella trichopoda HOM05D002688 ORTHO05D002911 3.0e-15 85.5 90 44.4
Nn7g36345 Nelumbo nucifera HOM05D002688 ORTHO05D002911 3.9e-15 85.1 99 44.4
Atru.chr11.2541 Acer truncatum HOM05D002688 ORTHO05D002911 5.1e-15 84.7 98 44.9
CDE08G0966 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 5.1e-15 84.7 92 48.9
Cpa.g.sc125.56 Carica papaya HOM05D002688 ORTHO05D002911 6.7e-15 84.3 88 46.6
FvH4_7g01670 Fragaria vesca HOM05D002688 ORTHO05D002911 6.7e-15 84.3 89 44.9
Manes.07G011700 Manihot esculenta HOM05D002688 ORTHO05D002911 1.1e-14 83.6 98 48.0
PGSC0003DMG400006770 Solanum tuberosum HOM05D002688 ORTHO05D002911 1.1e-14 83.6 93 44.1
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 1.5e-14 83.2 88 46.6
CiPaw.13G008400 Carya illinoinensis HOM05D002688 ORTHO05D002911 1.5e-14 83.2 98 45.9
FAN03G0468 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.5e-14 83.2 89 43.8
FAN03G1555 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.5e-14 83.2 89 43.8
PGR031G3541 Punica granatum HOM05D002688 ORTHO05D002911 1.9e-14 82.8 100 45.0
Solyc01g088000.4 Solanum lycopersicum HOM05D002688 ORTHO05D002911 1.9e-14 82.8 93 44.1
SMO117G0362 Selaginella moellendorffii HOM05D002688 ORTHO05D002911 2.5e-14 82.4 101 45.5
Sopen01g034900 Solanum pennellii HOM05D002688 ORTHO05D002911 2.5e-14 82.4 93 43.0
BcaB02g07393 Brassica carinata HOM05D002688 ORTHO05D002911 3.3e-14 82.0 97 41.2
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 3.3e-14 82.0 88 46.6
ECA248G3893 Erigeron canadensis HOM05D002688 ORTHO05D002911 3.3e-14 82.0 99 43.4
Sp5g02340 Schrenkiella parvula HOM05D002688 ORTHO05D002911 4.3e-14 81.6 97 40.2
SMO114G0028 Selaginella moellendorffii HOM05D002688 ORTHO05D002911 4.3e-14 81.6 86 48.8
Lalb_Chr01g0000511 Lupinus albus HOM05D002688 ORTHO05D002911 5.6e-14 81.3 90 47.8
Rhsim07G0059300 Rhododendron simsii HOM05D002688 ORTHO05D002911 5.6e-14 81.3 98 43.9
Nn2g15180 Nelumbo nucifera HOM05D002688 ORTHO05D002911 7.4e-14 80.9 98 44.9
PSO339G1014 Papaver somniferum HOM05D002688 ORTHO05D002911 7.4e-14 80.9 92 45.7
HanXRQChr01g0015671 Helianthus annuus HOM05D002688 ORTHO05D002911 9.6e-14 80.5 91 46.2
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 9.6e-14 80.5 88 45.5
Carub.0005s2766 Capsella rubella HOM05D002688 ORTHO05D002911 1.3e-13 80.1 97 40.2
Sed0003035 Sechium edule HOM05D002688 ORTHO05D002911 1.3e-13 80.1 101 43.6
AL5G43230 Arabidopsis lyrata HOM05D002688 ORTHO05D002911 1.6e-13 79.7 97 39.2
AT3G60910 Arabidopsis thaliana HOM05D002688 ORTHO05D002911 1.6e-13 79.7 92 41.3
HanXRQChr06g0179711 Helianthus annuus HOM05D002688 ORTHO05D002911 1.6e-13 79.7 98 41.8
Sc14g0004970 Simmondsia chinensis HOM05D002688 ORTHO05D002911 1.6e-13 79.7 94 41.5
unitig_22.g5874 Utricularia gibba HOM05D002688 ORTHO05D002911 1.6e-13 79.7 87 47.1
A07p25270 Brassica napus HOM05D002688 ORTHO05D002911 2.1e-13 79.3 97 40.2
BraA07t30169Z Brassica rapa HOM05D002688 ORTHO05D002911 2.1e-13 79.3 97 40.2
Psat7g146520 Pisum sativum HOM05D002688 ORTHO05D002911 2.1e-13 79.3 88 44.3
TWI73G0483 Tripterygium wilfordii HOM05D002688 ORTHO05D002911 2.1e-13 79.3 94 46.8
HPP92_001357 Vanilla planifolia HOM05D002688 ORTHO05D002911 2.1e-13 79.3 87 46.0
Actinidia23255 Actinidia chinensis HOM05D002688 ORTHO05D002911 2.8e-13 79.0 98 44.9
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 2.8e-13 79.0 87 48.3
Nitab4.5_0011487g0010 Nicotiana tabacum HOM05D002688 ORTHO05D002911 2.8e-13 79.0 91 42.9
EL10Ac2g04381 Beta vulgaris HOM05D002688 ORTHO05D002911 4.8e-13 78.2 92 43.5
BcaC07g42648 Brassica carinata HOM05D002688 ORTHO05D002911 4.8e-13 78.2 97 39.2
Lj3g0020648 Lotus japonicus HOM05D002688 ORTHO05D002911 4.8e-13 78.2 88 44.3
arahy.Tifrunner.gnm1.ann1.KYFF3P Arachis hypogaea HOM05D002688 ORTHO05D002911 6.2e-13 77.8 117 40.2
arahy.Tifrunner.gnm1.ann1.UW2SL3 Arachis hypogaea HOM05D002688 ORTHO05D002911 6.2e-13 77.8 117 40.2
Cc02_g28990 Coffea canephora HOM05D002688 ORTHO05D002911 6.2e-13 77.8 93 43.0
Thhalv10006192m.g Eutrema salsugineum HOM05D002688 ORTHO05D002911 6.2e-13 77.8 98 39.8
TPR.G8364 Trifolium pratense HOM05D002688 ORTHO05D002911 6.2e-13 77.8 89 44.9
CAN.G909.16 Capsicum annuum HOM05D002688 ORTHO05D002911 8.1e-13 77.4 92 43.5
CARHR171300 Cardamine hirsuta HOM05D002688 ORTHO05D002911 8.1e-13 77.4 97 40.2
Lsat_1_v5_gn_1_102320 Lactuca sativa HOM05D002688 ORTHO05D002911 8.1e-13 77.4 92 42.4
THA.LOC104801972 Tarenaya hassleriana HOM05D002688 ORTHO05D002911 8.1e-13 77.4 91 39.6
COL.COLO4_12330 Corchorus olitorius HOM05D002688 ORTHO05D002911 1.1e-12 77.0 104 44.2
Dinv07427 Davidia involucrata HOM05D002688 ORTHO05D002911 1.1e-12 77.0 90 43.3
MSTRG.5046 Avicennia marina HOM05D002688 ORTHO05D002911 1.4e-12 76.6 90 44.4
BcaC08g45095 Brassica carinata HOM05D002688 ORTHO05D002911 1.4e-12 76.6 95 38.9
C06p27030 Brassica napus HOM05D002688 ORTHO05D002911 1.4e-12 76.6 95 38.9
BolC6t37875H Brassica oleracea HOM05D002688 ORTHO05D002911 1.4e-12 76.6 95 38.9
Ciclev10032531m.g Citrus clementina HOM05D002688 ORTHO05D002911 1.4e-12 76.6 88 46.6
CDE02G4048 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 1.8e-12 76.3 89 46.1
Migut.N01803 Erythranthe guttata HOM05D002688 ORTHO05D002911 1.8e-12 76.3 90 43.3
Peaxi162Scf01108g00331 Petunia axillaris HOM05D002688 ORTHO05D002911 1.8e-12 76.3 91 44.0
Duzib133G1529 Durio zibethinus HOM05D002688 ORTHO05D002911 2.4e-12 75.9 90 46.7
FAN03G1637 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.1e-12 75.5 95 40.0
PSO384G1250 Papaver somniferum HOM05D002688 ORTHO05D002911 3.1e-12 75.5 91 44.0
ClCG09G004460 Citrullus lanatus HOM05D002688 ORTHO05D002911 4.0e-12 75.1 106 39.6
SalBow6G5965 Salvia bowleyana HOM05D002688 ORTHO05D002911 4.0e-12 75.1 90 44.4
Hma1.2p1_0269F.1_g107770 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 5.3e-12 74.7 103 40.8
Thecc.01G404400 Theobroma cacao HOM05D002688 ORTHO05D002911 5.3e-12 74.7 90 45.6
Zm00001eb329570 Zea mays HOM05D002688 ORTHO05D002911 5.3e-12 74.7 86 44.2
Ca_26317_v3 Cicer arietinum L. HOM05D002688 ORTHO05D002911 6.9e-12 74.3 85 45.9
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 9.0e-12 73.9 90 45.6
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 9.0e-12 73.9 90 45.6
BcaC07g40610 Brassica carinata HOM05D002688 ORTHO05D002911 1.5e-11 73.2 95 37.9
C08p35850 Brassica napus HOM05D002688 ORTHO05D002911 1.5e-11 73.2 95 37.9
Gohir.A08G141400 Gossypium hirsutum HOM05D002688 ORTHO05D002911 1.5e-11 73.2 90 45.6
Eucgr.G03283 Eucalyptus grandis HOM05D002688 ORTHO05D002911 6.4e-10 67.8 123 35.0
Lj7C576G5 Lonicera japonica HOM05D002688 ORTHO05D002911 3.2e-09 65.5 83 42.2
Os05g0392200 Oryza sativa ssp. japonica HOM05D002688 ORTHO05D002911 3.2e-09 65.5 89 39.3
Sabra09G0040700 Salix brachista HOM05D002688 ORTHO05D002911 7.1e-09 64.3 148 30.4
MELO3C023588.2 Cucumis melo HOM05D002688 ORTHO05D002911 1.2e-08 63.5 78 43.6
vmacro13703 Vaccinium macrocarpon HOM05D002688 ORTHO05D002911 4.6e-08 61.6 153 29.4
SGA_v2.0_scaffold354G49751 Striga asiatica HOM05D002688 ORTHO05D002911 1.8e-07 59.7 79 39.2
CDE02G2980 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 3.9e-07 58.5 87 39.1
MBI18_g28906_MAGBIO Magnolia biondii HOM05D002688 ORTHO05D002911 3.9e-07 58.5 94 38.3
Zm00001eb287290 Zea mays HOM05D002688 ORTHO05D002911 3.9e-07 58.5 106 35.8
CsaV3_3G015470 Cucumis sativus L. HOM05D002688 ORTHO05D002911 1.5e-06 56.6 89 36.0
CDE09G0304 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 3.3e-06 55.5 87 40.2
MELO3C006746.2 Cucumis melo HOM05D002688 ORTHO05D002911 9.6e-06 53.9 89 36.0
Duzib151G1114 Durio zibethinus HOM05D002688 ORTHO05D002911 9.6e-06 53.9 89 40.4


User provided reference genes

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