Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.5e-147 525.4 261 100.0
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.3e-139 497.3 261 93.1
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 91.2
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 87.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.1
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 87.7
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 87.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 87.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.4
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.4
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 86.2
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.4
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 86.6
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 87.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 86.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 87.4
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.2e-130 467.6 260 88.1
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 87.0
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.0
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.0
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 86.2
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 86.2
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 86.2
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 86.2
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 87.4
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 87.0
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 86.6
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 86.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 86.6
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 86.2
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 86.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 86.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 86.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 86.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 87.0
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 86.6
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 85.8
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 85.8
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 86.6
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 86.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 85.8
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 85.8
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.4
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 87.0
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.2e-128 463.4 260 86.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 85.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.5e-128 463.0 260 86.2
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 86.6
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 86.2
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 86.2
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.6e-128 462.2 258 87.2
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 85.1
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.0
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.6e-128 462.2 260 86.9
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 86.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 3.4e-128 461.8 265 85.3
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 86.6
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 86.6
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 4.4e-128 461.5 260 85.8
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 86.6
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 86.6
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 85.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 86.2
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 86.2
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 85.8
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 85.1
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 85.8
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.7e-127 459.5 255 87.1
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.4
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.2e-127 459.1 259 87.3
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.1
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.8
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 84.7
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 85.4
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-126 456.8 260 85.0
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 83.9
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 85.1
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 85.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 85.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 85.4
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 85.1
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 84.3
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 85.1
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 7.1e-126 454.1 260 85.4
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 85.4
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 85.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 83.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 82.8
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 84.3
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 7.8e-125 450.7 269 82.5
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 85.1
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 83.1
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 83.9
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 82.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 84.3
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 83.5
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.6e-124 447.2 277 80.1
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 82.0
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 83.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 83.5
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 83.1
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.5e-123 445.7 264 83.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.3e-123 444.9 260 83.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.3e-123 444.9 260 83.5
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 84.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 7.3e-123 444.1 285 78.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 9.6e-123 443.7 260 83.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 83.1
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 79.7
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.6e-122 441.8 259 83.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 3.6e-122 441.8 259 83.4
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 83.1
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 82.0
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 82.4
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 80.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 82.4
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 83.1
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 82.8
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.4e-120 435.3 261 81.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.3e-119 433.3 255 82.0
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 81.2
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 8.4e-119 430.6 261 80.8
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.9e-118 429.5 266 82.3
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 9.3e-118 427.2 276 78.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.5e-117 425.2 240 85.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-116 422.9 241 84.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.1e-116 421.4 241 84.2
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 9.6e-115 417.2 261 78.9
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.2
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.2
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.7e-109 399.1 261 77.0
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.0e-108 397.1 261 77.8
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 4.8e-106 388.3 213 87.8
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.5e-104 383.3 261 74.7
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-103 380.2 337 60.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.8e-103 378.6 222 83.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.5e-102 374.8 309 66.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.6e-101 373.2 201 88.6
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.3e-100 370.2 195 91.3
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 5.1e-100 368.2 249 73.1
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 8.7e-100 367.5 240 74.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.2e-94 349.0 200 85.0
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.2e-94 349.0 260 65.4
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.3e-91 338.6 258 70.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-84 316.6 177 84.2
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 6.9e-81 304.7 161 88.8
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.9e-72 275.0 228 60.1
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.6e-67 259.6 242 60.3
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-56 223.4 135 83.0
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-56 223.4 113 92.9
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 6.5e-55 218.4 143 78.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 2.5e-54 216.5 142 77.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.4e-49 199.9 99 92.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-39 167.5 109 74.3
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.7e-39 167.2 108 76.9
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.3e-39 166.8 196 50.5
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.8e-39 166.0 271 42.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.5e-38 164.1 135 63.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 9.5e-38 161.4 92 85.9
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.7e-32 143.3 195 45.6
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 4.3e-30 136.0 100 72.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.5e-27 127.5 81 80.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 6.4e-26 122.1 92 65.2
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.2e-21 105.5 111 56.8
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 9.8e-19 98.2 64 78.1
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.4e-11 72.8 81 50.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 3.2e-09 66.6 56 64.3
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 6.0e-08 62.4 35 82.9
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 1.0e-07 61.6 52 65.4
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 3.0e-07 60.1 62 58.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 5.1e-07 59.3 59 54.2
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 6.6e-07 58.9 85 40.0


User provided reference genes

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