Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 0.0e+00 1442.9 1070 100.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.0e-33 149.1 837 49.0
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.6e-33 148.7 679 57.1
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 8.4e-32 143.7 715 49.4
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.4e-31 142.1 720 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 5.4e-31 141.0 685 55.8
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 7.1e-31 140.6 660 47.1
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.0e-29 136.7 665 43.9
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.3e-29 136.3 264 31.4
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 8.7e-29 133.7 664 52.9
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.5e-28 132.9 656 45.9
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.9e-28 132.5 664 57.5
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.9e-28 132.5 659 50.7
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.3e-27 129.8 661 57.6
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.3e-27 129.8 665 52.0
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.1e-27 129.0 671 50.4
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 3.6e-27 128.3 659 43.1
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.1e-26 126.7 663 49.6
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-26 126.3 761 52.2
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.8e-26 125.9 664 56.9
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 4.0e-26 124.8 661 53.6
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 5.3e-26 124.4 666 56.6
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 5.3e-26 124.4 653 49.2
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 6.9e-26 124.0 726 54.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.2e-25 123.2 649 47.9
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.5e-25 122.9 706 55.0
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 2.6e-25 122.1 656 56.7
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.6e-25 122.1 667 51.9
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.4e-25 121.7 667 49.0
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 9.9e-25 120.2 238 30.7
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 9.9e-25 120.2 238 30.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 9.9e-25 120.2 238 30.7
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.3e-24 119.8 956 45.9
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 1.3e-24 119.8 692 49.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.9e-24 118.6 653 57.7
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.9e-24 118.6 656 51.5
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.9e-24 118.6 238 30.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.8e-24 118.2 654 58.0
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 3.8e-24 118.2 957 46.0
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 4.9e-24 117.9 694 55.5
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 4.9e-24 117.9 694 55.5
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.4e-24 117.5 235 29.8
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 8.4e-24 117.1 652 50.6
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 8.4e-24 117.1 689 42.5
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 8.4e-24 117.1 731 45.3
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.1e-23 116.7 666 52.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.1e-23 116.7 661 51.3
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 1.1e-23 116.7 658 57.8
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.4e-23 116.3 656 51.5
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.4e-23 116.3 238 31.1
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.4e-23 116.3 654 41.1
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.4e-23 116.3 235 29.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.9e-23 115.9 649 50.4
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.9e-23 115.9 237 30.8
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 3.2e-23 115.2 696 54.9
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.2e-23 115.2 116 49.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 3.2e-23 115.2 677 42.4
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.4e-23 114.4 958 45.7
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 5.4e-23 114.4 239 30.5
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 7.1e-23 114.0 657 57.1
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.3e-23 113.6 673 56.3
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 9.3e-23 113.6 655 50.7
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.1e-22 112.5 654 57.5
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.1e-22 112.5 654 51.7
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 2.7e-22 112.1 652 49.1
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 2.7e-22 112.1 661 56.4
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 2.7e-22 112.1 657 57.1
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.6e-22 111.3 233 31.3
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 6.0e-22 110.9 652 47.9
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 6.0e-22 110.9 677 48.9
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 6.0e-22 110.9 247 30.4
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.0e-21 110.2 241 32.0
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.3e-21 109.8 168 41.1
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.3e-21 109.8 649 51.3
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.3e-21 109.8 663 57.3
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.3e-21 109.8 663 55.7
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 2.3e-21 109.0 198 33.3
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 3.0e-21 108.6 235 28.5
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 3.9e-21 108.2 233 30.9
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.9e-21 108.2 684 42.0
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 5.1e-21 107.8 197 33.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 5.1e-21 107.8 667 51.4
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.7e-21 107.5 136 43.4
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.5e-20 106.3 641 39.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.5e-20 106.3 671 50.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.3e-20 104.8 199 31.7
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 4.3e-20 104.8 202 34.2
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 5.6e-20 104.4 671 49.9
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 7.4e-20 104.0 124 44.4
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 9.6e-20 103.6 113 45.1
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.3e-19 103.2 197 32.0
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.3e-19 103.2 116 42.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 1.6e-19 102.8 236 30.1
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.8e-19 102.1 616 53.2
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 3.7e-19 101.7 721 53.1
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.7e-19 101.7 100 48.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 4.8e-19 101.3 659 55.8
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 6.2e-19 100.9 239 29.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 8.1e-19 100.5 115 45.2
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.1e-18 100.1 101 45.5
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.4e-18 99.8 649 50.7
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 4.0e-18 98.2 197 31.0
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 9.0e-18 97.1 270 27.0
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.2e-17 96.7 101 42.6
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.0e-17 95.9 111 42.3
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.4e-17 95.1 101 45.5
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 3.4e-17 95.1 199 30.2
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-15 89.7 114 43.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.1e-14 85.9 128 35.9
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.7e-14 85.5 220 25.5
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.0e-13 83.6 225 28.9
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.0e-13 83.6 191 32.5
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.3e-13 82.4 93 46.2
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 3.9e-13 81.6 298 23.8
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.9e-13 81.6 196 29.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 6.7e-13 80.9 133 35.3
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 6.9e-10 70.9 66 51.5
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 4.5e-09 68.2 109 36.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.1e-07 60.8 121 31.4


User provided reference genes

Program Settings