Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 5.3e-170 600.9 297 100.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 1.1e-114 417.2 298 67.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 4.1e-114 415.2 289 69.2
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 5.4e-114 414.8 286 70.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 5.4e-114 414.8 298 68.1
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 9.2e-114 414.1 289 69.2
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 9.2e-114 414.1 289 69.2
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 9.2e-114 414.1 289 69.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 1.2e-113 413.7 286 69.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.6e-113 413.3 289 69.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-113 412.1 284 69.7
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 4.6e-113 411.8 286 69.9
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.6e-113 411.8 290 70.3
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.0e-113 411.4 286 69.9
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.3e-112 410.2 278 70.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.3e-112 410.2 286 69.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.3e-112 410.2 278 71.2
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.7e-112 409.8 296 67.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.3e-112 409.5 278 71.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.3e-112 409.5 290 70.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.3e-112 409.5 273 71.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.9e-112 408.7 285 70.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 3.9e-112 408.7 278 70.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.9e-112 408.7 285 69.5
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 5.1e-112 408.3 278 70.5
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 6.6e-112 407.9 297 66.7
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 6.6e-112 407.9 277 69.7
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-111 407.1 285 69.8
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.5e-111 406.8 283 68.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-111 406.8 286 68.9
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.5e-111 406.8 272 72.1
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.5e-111 406.0 279 71.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 4.3e-111 405.2 280 70.4
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.3e-111 405.2 285 69.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 4.3e-111 405.2 278 70.1
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 5.6e-111 404.8 278 69.8
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 5.6e-111 404.8 279 68.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 7.3e-111 404.4 286 68.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 7.3e-111 404.4 278 69.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 9.5e-111 404.1 278 69.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 9.5e-111 404.1 278 70.9
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.5e-111 404.1 276 69.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.2e-110 403.7 276 70.7
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.6e-110 403.3 278 69.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.6e-110 403.3 279 68.8
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.1e-110 402.9 278 70.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.8e-110 402.5 288 67.0
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.8e-110 402.5 278 70.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.8e-110 402.5 286 67.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.6e-110 402.1 287 68.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.6e-110 402.1 278 69.8
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.6e-110 402.1 292 66.4
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 6.2e-110 401.4 287 66.9
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 8.1e-110 401.0 276 70.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.1e-109 400.6 283 68.2
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.4e-109 400.2 286 67.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.4e-109 400.2 287 67.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.8e-109 399.8 278 68.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.8e-109 399.8 278 69.1
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.1e-109 399.1 286 67.8
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.1e-109 399.1 287 66.6
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.1e-109 399.1 278 67.6
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.1e-109 399.1 287 69.0
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.0e-109 398.7 278 69.1
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.0e-109 398.7 276 68.5
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 5.2e-109 398.3 279 69.2
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 6.8e-109 397.9 278 68.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.9e-109 397.5 278 69.4
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 8.9e-109 397.5 287 67.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.2e-108 397.1 274 69.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.2e-108 397.1 276 69.2
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.5e-108 396.7 263 70.7
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.0e-108 396.4 285 67.4
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.0e-108 396.4 286 67.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.0e-108 396.4 272 69.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.6e-108 396.0 278 69.1
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.4e-108 395.6 246 74.8
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 3.4e-108 395.6 297 65.3
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 3.4e-108 395.6 252 73.8
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.4e-108 395.6 289 67.5
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.4e-108 395.6 279 70.3
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.8e-108 394.8 274 68.2
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.6e-108 394.4 273 70.3
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 7.6e-108 394.4 276 68.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.7e-107 393.3 278 67.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.7e-107 393.3 273 68.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.7e-107 393.3 297 65.3
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.9e-107 392.5 280 68.2
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.8e-107 392.1 287 67.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.8e-107 392.1 281 68.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 6.4e-107 391.3 277 69.7
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.4e-107 391.3 279 67.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.4e-107 391.3 278 67.6
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.4e-107 391.3 276 66.7
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.4e-107 391.0 272 69.1
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-106 390.6 299 64.5
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-106 390.6 274 69.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-106 390.6 276 66.7
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.9e-106 389.8 291 65.6
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 2.4e-106 389.4 285 67.4
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 3.2e-106 389.0 286 67.5
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.2e-106 388.7 288 66.7
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 4.2e-106 388.7 286 65.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 4.2e-106 388.7 287 65.5
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 7.1e-106 387.9 287 65.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 9.2e-106 387.5 283 66.8
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.6e-105 386.7 285 67.0
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 4.6e-105 385.2 278 66.9
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 6.0e-105 384.8 279 67.0
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 7.8e-105 384.4 252 71.4
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 5.1e-104 381.7 302 63.6
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 8.7e-104 380.9 259 68.3
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.1e-103 380.6 290 66.2
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.2e-102 377.1 251 70.9
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.1e-101 374.0 280 64.6
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 3.1e-101 372.5 272 66.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 3.1e-101 372.5 254 69.7
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.4e-100 369.0 293 61.8
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 7.6e-100 367.9 279 65.2
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.9e-100 367.5 259 68.0
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 3.8e-99 365.5 286 63.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 6.4e-99 364.8 278 66.2
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-97 359.8 306 58.5
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.6e-97 358.6 298 62.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.5e-95 352.8 249 69.5
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 4.3e-95 352.1 360 52.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.6e-95 351.7 221 75.1
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.3e-95 351.3 214 75.2
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.8e-94 349.4 277 63.5
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.9e-93 344.7 247 67.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-92 343.6 248 67.3
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 9.9e-92 340.9 279 62.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.2e-91 339.7 218 72.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.2e-91 339.7 218 72.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 9.6e-87 324.3 200 73.5
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 3.5e-81 305.8 212 69.3
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 4.3e-79 298.9 216 68.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 5.6e-79 298.5 182 75.8
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-77 293.5 287 54.4
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.6e-76 289.7 254 63.8
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 4.9e-75 285.4 182 73.6
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 9.3e-74 281.2 202 66.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 6.5e-67 258.5 174 69.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.3e-64 250.0 195 64.6
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 3.9e-64 249.2 185 67.0
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.0e-63 246.9 196 65.3
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.7e-63 245.4 152 75.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.4e-53 213.4 140 70.0
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 2.4e-53 213.4 209 56.5
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-43 181.0 119 69.7
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 2.7e-36 156.8 157 50.3
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.5e-36 156.0 135 56.3
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.9e-35 153.3 174 50.6
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 6.5e-35 152.1 105 66.7
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 1.6e-33 147.5 308 33.1
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.2e-30 137.1 118 56.8
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.8e-30 136.7 87 71.3
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.7e-27 127.5 174 43.1
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-23 113.6 76 67.1
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-22 110.9 69 78.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 3.7e-22 109.8 66 80.3
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.7e-20 103.6 143 44.1
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-13 81.3 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.7e-11 74.3 78 50.0
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 5.0e-11 72.8 45 66.7
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 6.6e-11 72.4 82 43.9
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 9.5e-10 68.6 158 32.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.1e-08 63.5 61 57.4
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.1e-08 63.5 61 57.4
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 6.8e-08 62.4 92 40.2
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.9e-08 62.0 109 34.9
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.4e-07 60.1 59 59.3
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.2e-06 57.4 103 35.9
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 4.9e-06 56.2 55 47.3
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.3e-06 55.5 34 67.6
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 8.3e-06 55.5 43 60.5


User provided reference genes

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