Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 0.0e+00 1356.7 716 100.0
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.9e-283 978.0 716 75.0
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.4e-184 649.8 683 56.7
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.0e-184 648.3 666 58.1
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 5.6e-56 223.4 784 31.6
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 2.5e-32 144.8 448 29.0
AagrBONN_evm.TU.Sc2ySwM_362.2955 Anthoceros agrestis HOM05D005715 ORTHO05D007160 8.7e-25 119.8 239 40.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.6e-23 114.4 159 37.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 3.1e-22 111.3 161 38.5
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.8e-21 107.1 156 37.2
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 7.6e-21 106.7 220 33.6
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.3e-20 105.9 159 35.8
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.8e-20 104.4 154 39.0
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.8e-20 104.4 159 39.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.8e-20 104.4 159 39.0
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.8e-20 104.4 370 26.2
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 4.9e-20 104.0 154 37.0
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 6.4e-20 103.6 170 34.7
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.1e-19 102.8 164 36.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.4e-19 102.4 162 37.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.4e-19 101.7 153 37.3
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.4e-19 101.7 161 39.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 3.2e-19 101.3 165 35.8
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.2e-19 100.9 154 36.4
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 4.2e-19 100.9 162 37.0
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 5.4e-19 100.5 154 38.3
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.4e-19 100.5 171 33.9
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 5.4e-19 100.5 170 37.6
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.3e-19 99.8 171 33.9
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 9.3e-19 99.8 157 37.6
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.2e-18 99.4 161 39.1
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.2e-18 99.4 161 39.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.1e-18 98.6 158 34.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.7e-18 98.2 155 36.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.5e-18 97.8 160 36.2
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.6e-18 97.4 161 35.4
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.6e-18 97.4 164 36.0
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 6.0e-18 97.1 153 35.3
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.0e-18 97.1 163 35.6
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 6.0e-18 97.1 160 34.4
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 6.0e-18 97.1 156 34.6
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.0e-18 97.1 156 34.6
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 6.0e-18 97.1 161 36.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 6.0e-18 97.1 181 34.3
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 7.9e-18 96.7 158 33.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 7.9e-18 96.7 222 31.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.0e-17 96.3 153 33.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-17 96.3 164 34.8
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.0e-17 96.3 157 34.4
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-17 95.9 156 34.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-17 95.9 165 34.5
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.3e-17 95.9 156 36.5
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.8e-17 95.5 156 36.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.8e-17 95.5 153 33.3
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.8e-17 95.5 158 36.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-17 95.1 153 33.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 2.3e-17 95.1 168 35.7
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.3e-17 95.1 155 36.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.0e-17 94.7 158 35.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.0e-17 94.7 180 30.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 3.0e-17 94.7 155 32.3
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.0e-17 94.7 155 34.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.1e-17 94.0 678 24.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 6.7e-17 93.6 153 32.7
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 6.7e-17 93.6 160 33.1
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 6.7e-17 93.6 156 37.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 8.7e-17 93.2 153 32.7
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.1e-16 92.8 166 33.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.5e-16 92.4 167 34.7
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.9e-16 92.0 159 35.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.5e-16 91.7 153 35.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.5e-16 91.7 167 34.7
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.5e-16 91.7 163 35.6
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.5e-16 91.7 154 34.4
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.5e-16 91.7 167 33.5
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 5.6e-16 90.5 168 35.7
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 5.6e-16 90.5 163 35.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 9.6e-16 89.7 202 31.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-15 89.0 163 33.7
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.8e-15 88.2 163 33.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.8e-15 88.2 162 33.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.8e-15 88.2 200 30.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 2.8e-15 88.2 168 35.7
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.8e-15 88.2 156 33.3
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.7e-15 87.8 155 34.8
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 8.1e-15 86.7 162 29.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.1e-15 86.7 162 33.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 8.1e-15 86.7 158 31.0
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 8.1e-15 86.7 133 37.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.1e-14 86.3 160 34.4
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.1e-14 86.3 139 36.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.1e-14 86.3 159 32.1
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.4e-14 85.9 180 33.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.8e-14 85.5 162 33.3
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.8e-14 85.5 159 35.2
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.8e-14 85.5 171 31.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.4e-14 85.1 163 33.1
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-14 84.7 162 29.6
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.1e-14 84.7 156 31.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 4.0e-14 84.3 156 30.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 4.0e-14 84.3 156 32.1
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 4.0e-14 84.3 155 32.9
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 5.3e-14 84.0 177 32.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 6.9e-14 83.6 160 28.8
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 9.0e-14 83.2 161 29.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 9.0e-14 83.2 157 33.1
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 9.0e-14 83.2 140 33.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.2e-13 82.8 162 30.9
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.2e-13 82.8 162 30.9
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.5e-13 82.4 159 32.1
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.5e-13 82.4 158 32.9
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.5e-13 82.4 158 31.6
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.0e-13 82.0 158 32.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 2.6e-13 81.6 165 32.1
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.4e-13 81.3 147 35.4
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.4e-13 81.3 126 34.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.4e-13 81.3 165 32.1
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 5.8e-13 80.5 159 32.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 9.9e-13 79.7 165 32.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-12 78.6 138 31.9
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.2e-12 78.6 164 34.1
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.9e-12 78.2 160 30.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 4.9e-12 77.4 234 28.6
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 6.4e-12 77.0 160 31.2
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 8.4e-12 76.6 168 31.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.2e-11 74.7 161 32.3
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.2e-11 74.7 166 31.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 5.5e-11 73.9 167 27.5
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 9.3e-11 73.2 122 29.5
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 4.6e-10 70.9 161 29.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.0e-09 69.7 162 27.2
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-09 68.9 84 44.0
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.0e-09 68.2 98 40.8
FvH4_6g52960 Fragaria vesca HOM05D001735 ORTHO05D001640 3.0e-09 68.2 176 33.0
FAN14G4436 Fragaria x ananassa HOM05D001735 ORTHO05D001640 3.0e-09 68.2 176 33.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.0e-09 68.2 89 41.6
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 5.1e-09 67.4 171 30.4
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 8.7e-09 66.6 156 29.5
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 1.5e-08 65.9 159 28.9
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 65.9 160 30.6
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-08 65.1 160 30.0
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-08 65.1 160 30.0
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-08 65.1 160 30.0
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-08 65.1 160 30.0
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-08 65.1 160 30.0
FAN05G0383 Fragaria x ananassa HOM05D001735 ORTHO05D001640 3.3e-08 64.7 176 33.0
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 5.6e-08 63.9 160 29.4
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 63.5 160 30.0
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 9.6e-08 63.2 158 27.8
CDE09G1341 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 1.6e-07 62.4 162 27.8
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 3.7e-07 61.2 179 28.5
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 4.8e-07 60.8 157 31.2
Duzib084G1429 Durio zibethinus HOM05D001735 ORTHO05D001640 6.2e-07 60.5 163 28.2
FAN02G2162 Fragaria x ananassa HOM05D001735 ORTHO05D001640 1.1e-06 59.7 187 29.9
HPP92_021372 Vanilla planifolia HOM05D001735 ORTHO05D001640 1.1e-06 59.7 166 27.7
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.4e-06 59.3 170 27.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 2.4e-06 58.5 131 29.8
FAN09G0711 Fragaria x ananassa HOM05D001735 ORTHO05D001640 2.4e-06 58.5 176 31.8
Rhsim12G0172700 Rhododendron simsii HOM05D001735 ORTHO05D001640 3.1e-06 58.2 168 24.4
Gohir.A09G033850 Gossypium hirsutum HOM05D001735 ORTHO05D001640 4.0e-06 57.8 163 28.2


User provided reference genes

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