Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 2.1e-183 645.6 326 100.0
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 1.2e-50 204.5 242 44.6
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 3.5e-50 203.0 208 49.0
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.5e-50 203.0 192 54.2
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 3.5e-50 203.0 203 51.2
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 4.6e-50 202.6 190 54.2
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 2.3e-49 200.3 195 50.8
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 3.0e-49 199.9 188 51.6
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 3.0e-49 199.9 189 52.4
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.9e-49 199.5 212 50.5
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 5.1e-49 199.1 198 50.0
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 8.7e-49 198.4 197 50.3
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 1.1e-48 198.0 195 50.3
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 1.5e-48 197.6 194 50.5
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 1.5e-48 197.6 179 56.4
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 1.5e-48 197.6 188 52.7
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 1.9e-48 197.2 189 51.9
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 2.5e-48 196.8 194 51.5
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 4.3e-48 196.1 197 48.7
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 7.4e-48 195.3 207 47.3
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 7.4e-48 195.3 204 51.0
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 7.4e-48 195.3 224 45.1
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 9.7e-48 194.9 196 50.5
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.3e-47 194.5 188 51.1
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.6e-47 194.1 188 51.6
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.6e-47 194.1 192 50.5
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 2.8e-47 193.4 195 50.3
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 2.8e-47 193.4 188 51.6
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 2.8e-47 193.4 188 51.6
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 2.8e-47 193.4 200 49.5
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 3.7e-47 193.0 202 50.5
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 3.7e-47 193.0 202 50.5
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 3.7e-47 193.0 202 50.5
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 3.7e-47 193.0 208 47.6
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 3.7e-47 193.0 195 48.7
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 3.7e-47 193.0 195 48.7
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 4.8e-47 192.6 210 47.6
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 4.8e-47 192.6 208 47.6
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 4.8e-47 192.6 210 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 8.2e-47 191.8 155 62.6
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 8.2e-47 191.8 199 48.2
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 8.2e-47 191.8 218 44.5
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 8.2e-47 191.8 187 49.7
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 1.1e-46 191.4 179 53.6
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 1.1e-46 191.4 188 51.6
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.4e-46 191.0 202 50.0
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.4e-46 191.0 170 54.7
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 1.4e-46 191.0 208 48.6
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 1.4e-46 191.0 188 50.5
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 1.8e-46 190.7 202 50.0
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 1.8e-46 190.7 178 54.5
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 3.1e-46 189.9 178 53.4
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 3.1e-46 189.9 203 47.3
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 3.1e-46 189.9 195 50.8
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 3.1e-46 189.9 199 48.7
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 4.1e-46 189.5 191 49.2
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 4.1e-46 189.5 185 50.8
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 5.3e-46 189.1 187 51.3
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 5.3e-46 189.1 208 46.2
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 5.3e-46 189.1 178 52.2
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 5.3e-46 189.1 189 50.3
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 6.9e-46 188.7 197 50.3
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 6.9e-46 188.7 194 52.6
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 9.0e-46 188.3 197 46.2
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 1.2e-45 188.0 187 50.3
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 1.2e-45 188.0 177 52.5
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.5e-45 187.6 197 48.7
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 1.5e-45 187.6 168 54.8
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 2.0e-45 187.2 198 50.5
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 2.0e-45 187.2 197 49.2
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 2.0e-45 187.2 197 47.2
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 3.4e-45 186.4 187 49.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 3.4e-45 186.4 195 47.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 4.5e-45 186.0 197 47.7
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 5.9e-45 185.7 170 56.5
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 5.9e-45 185.7 168 53.6
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 1.3e-44 184.5 178 52.2
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 2.2e-44 183.7 168 53.0
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 2.2e-44 183.7 196 45.9
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 2.2e-44 183.7 196 45.9
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 3.8e-44 183.0 193 48.7
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 3.8e-44 183.0 198 48.0
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 5.0e-44 182.6 175 52.6
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 5.0e-44 182.6 218 45.9
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 6.5e-44 182.2 178 51.1
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.5e-43 180.3 199 47.2
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 4.2e-43 179.5 200 45.5
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 5.5e-43 179.1 168 53.6
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 5.5e-43 179.1 188 48.9
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.1e-42 177.2 143 58.7
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 7.9e-42 175.3 197 44.2
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 1.0e-41 174.9 209 45.0
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.1e-40 171.4 179 51.4
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.2e-39 167.2 131 65.6
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 3.7e-39 166.4 194 46.4
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 4.1e-38 162.9 140 60.0
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.5e-37 161.0 128 60.9
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 4.5e-37 159.5 133 63.2
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 6.5e-36 155.6 194 45.4
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 8.2e-31 138.7 142 51.4
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 3.1e-30 136.7 212 41.0
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 7.0e-30 135.6 98 69.4
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 6.5e-28 129.0 186 41.4
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 9.7e-24 115.2 117 53.8
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.8e-23 113.6 116 54.3
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.6e-21 107.1 150 39.3
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 3.5e-21 106.7 220 30.9
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 7.7e-21 105.5 100 55.0
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.7e-20 104.4 221 32.1
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 2.3e-17 94.0 134 44.0
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 8.2e-15 85.5 242 29.8
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 1.6e-13 81.3 110 43.6
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.7e-12 77.8 64 62.5
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 3.6e-10 70.1 86 40.7
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.5e-08 64.7 56 58.9
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.3e-07 61.6 66 42.4
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 4.1e-06 56.6 51 52.9


User provided reference genes

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