Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 5.1e-84 314.3 151 100.0
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.0e-36 157.1 145 55.9
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.8e-36 156.4 148 52.7
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.5e-30 136.0 103 59.2
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 3.6e-29 132.1 147 47.6
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.2e-16 90.5 90 44.4
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.2e-16 90.5 81 49.4
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.6e-16 90.1 81 49.4
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.6e-16 90.1 81 48.1
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 5.9e-16 88.2 86 46.5
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 1.3e-15 87.0 82 43.9
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.7e-15 86.7 86 44.2
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 2.2e-15 86.3 86 45.3
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.2e-15 86.3 78 46.2
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 2.2e-15 86.3 61 57.4
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 2.9e-15 85.9 84 50.0
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 3.8e-15 85.5 64 56.2
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 3.8e-15 85.5 64 56.2
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 3.8e-15 85.5 64 56.2
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 3.8e-15 85.5 64 56.2
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 5.0e-15 85.1 94 42.6
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 6.5e-15 84.7 75 48.0
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-15 84.7 75 48.0
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 6.5e-15 84.7 75 48.0
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.5e-15 84.7 89 44.9
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 6.5e-15 84.7 61 55.7
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 8.5e-15 84.3 61 55.7
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 8.5e-15 84.3 75 48.0
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 8.5e-15 84.3 75 48.0
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 8.5e-15 84.3 61 55.7
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 8.5e-15 84.3 61 55.7
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 8.5e-15 84.3 61 55.7
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 1.1e-14 84.0 79 45.6
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 1.1e-14 84.0 68 50.0
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.5e-14 83.6 61 55.7
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.5e-14 83.6 86 40.7
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 1.5e-14 83.6 66 51.5
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 1.5e-14 83.6 61 54.1
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.9e-14 83.2 61 55.7
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 1.9e-14 83.2 61 54.1
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.9e-14 83.2 78 44.9
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 1.9e-14 83.2 61 54.1
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.9e-14 83.2 79 43.0
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 2.5e-14 82.8 60 53.3
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.5e-14 82.8 61 54.1
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.5e-14 82.8 61 54.1
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 2.5e-14 82.8 61 54.1
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.5e-14 82.8 61 54.1
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.5e-14 82.8 61 54.1
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 3.2e-14 82.4 61 54.1
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 4.2e-14 82.0 86 38.4
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.5e-14 81.6 60 55.0
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 5.5e-14 81.6 61 52.5
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 5.5e-14 81.6 61 52.5
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 7.2e-14 81.3 61 54.1
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 7.2e-14 81.3 86 38.4
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 7.2e-14 81.3 61 52.5
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 7.2e-14 81.3 61 52.5
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 7.2e-14 81.3 82 45.1
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 9.4e-14 80.9 61 52.5
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 9.4e-14 80.9 61 52.5
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 9.4e-14 80.9 61 52.5
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 9.4e-14 80.9 60 51.7
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.2e-13 80.5 82 45.1
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.2e-13 80.5 61 52.5
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.2e-13 80.5 62 54.8
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.6e-13 80.1 76 47.4
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.6e-13 80.1 61 52.5
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 1.6e-13 80.1 61 52.5
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 2.1e-13 79.7 61 52.5
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 2.1e-13 79.7 61 52.5
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.1e-13 79.7 61 52.5
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.1e-13 79.7 61 50.8
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.7e-13 79.3 61 50.8
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.7e-13 79.3 61 50.8
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.7e-13 79.3 61 50.8
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 2.7e-13 79.3 61 52.5
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 2.7e-13 79.3 85 38.8
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 3.6e-13 79.0 61 52.5
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 3.6e-13 79.0 61 52.5
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.7e-13 78.6 76 46.1
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 4.7e-13 78.6 61 52.5
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 6.1e-13 78.2 61 52.5
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 6.1e-13 78.2 61 50.8
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 6.1e-13 78.2 60 53.3
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 8.0e-13 77.8 61 50.8
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 8.0e-13 77.8 61 49.2
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 8.0e-13 77.8 90 42.2
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 8.0e-13 77.8 61 49.2
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 1.0e-12 77.4 90 37.8
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.8e-12 76.6 75 45.3
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 1.8e-12 76.6 86 38.4
SMO331G0005 Selaginella moellendorffii HOM05D003440 ORTHO05D003953 1.8e-12 76.6 57 57.9
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 2.3e-12 76.3 61 49.2
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 2.3e-12 76.3 84 42.9
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 3.0e-12 75.9 77 44.2
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 3.0e-12 75.9 59 50.8
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.0e-12 75.5 61 49.2
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.0e-12 75.5 61 49.2
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 4.0e-12 75.5 61 49.2
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 6.7e-12 74.7 85 41.2
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 8.8e-12 74.3 56 53.6
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 8.8e-12 74.3 56 53.6
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 1.5e-11 73.6 61 47.5
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 2.0e-11 73.2 69 46.4
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 2.6e-11 72.8 61 47.5
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 3.3e-11 72.4 93 39.8
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 5.7e-11 71.6 53 54.7
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 7.5e-11 71.2 71 43.7
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 9.7e-11 70.9 60 50.0
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 9.7e-11 70.9 87 40.2
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.7e-10 70.1 62 46.8
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.7e-10 70.1 53 52.8
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.7e-10 70.1 53 52.8
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 2.8e-10 69.3 56 46.4
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.7e-10 68.9 56 46.4
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.8e-10 68.6 68 44.1
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 8.2e-10 67.8 64 48.4
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 9.1e-09 64.3 61 45.9
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 3.5e-08 62.4 61 41.0
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 7.7e-08 61.2 73 39.7
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.0e-07 60.8 76 39.5
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 1.7e-07 60.1 73 35.6
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 3.8e-07 58.9 86 33.7
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 3.8e-07 58.9 102 30.4
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 3.8e-07 58.9 87 33.3
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 8.5e-07 57.8 75 36.0
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 8.5e-07 57.8 51 47.1
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 8.5e-07 57.8 51 47.1
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 1.5e-06 57.0 71 36.6
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 1.9e-06 56.6 39 53.8
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 4.2e-06 55.5 58 43.1
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 5.5e-06 55.1 64 40.6
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.2e-06 54.7 93 33.3
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.2e-06 54.7 93 33.3
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.2e-06 54.7 93 33.3


User provided reference genes

Program Settings