Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 8.2e-70 266.9 134 100.0
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.9e-38 162.2 109 71.6
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 4.9e-38 161.4 120 65.8
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.9e-38 161.4 104 76.0
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.1e-37 160.2 113 71.7
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.1e-37 160.2 114 68.4
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 1.4e-37 159.8 90 81.1
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 2.4e-37 159.1 112 69.6
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 2.4e-37 159.1 131 60.3
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 3.2e-37 158.7 90 80.0
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 3.2e-37 158.7 126 63.5
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 3.2e-37 158.7 131 62.6
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 3.2e-37 158.7 85 84.7
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 3.2e-37 158.7 123 63.4
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 4.1e-37 158.3 98 76.5
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 4.1e-37 158.3 104 70.2
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 4.1e-37 158.3 107 72.0
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 4.1e-37 158.3 107 72.0
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 4.1e-37 158.3 90 80.0
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 5.4e-37 157.9 126 62.7
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 5.4e-37 157.9 119 66.4
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 7.0e-37 157.5 105 73.3
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 9.2e-37 157.1 111 65.8
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.2e-36 156.8 111 65.8
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.2e-36 156.8 103 69.9
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.6e-36 156.4 136 58.8
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.6e-36 156.4 90 80.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.0e-36 156.0 107 69.2
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 2.7e-36 155.6 113 66.4
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 2.7e-36 155.6 113 67.3
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 2.7e-36 155.6 113 67.3
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.5e-36 155.2 101 72.3
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 3.5e-36 155.2 113 66.4
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 3.5e-36 155.2 89 78.7
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 3.5e-36 155.2 99 70.7
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 4.6e-36 154.8 90 77.8
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 4.6e-36 154.8 90 77.8
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 4.6e-36 154.8 102 70.6
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 5.9e-36 154.5 91 76.9
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 5.9e-36 154.5 131 61.8
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 7.8e-36 154.1 113 64.6
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 7.8e-36 154.1 89 78.7
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 7.8e-36 154.1 90 77.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 7.8e-36 154.1 89 79.8
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.0e-35 153.7 113 65.5
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 1.0e-35 153.7 90 77.8
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.0e-35 153.7 101 70.3
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.0e-35 153.7 90 76.7
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.3e-35 153.3 117 64.1
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.7e-35 152.9 110 66.4
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.7e-35 152.9 90 77.8
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 2.3e-35 152.5 111 65.8
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 2.3e-35 152.5 90 77.8
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 2.3e-35 152.5 89 78.7
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.9e-35 152.1 110 67.3
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.9e-35 151.8 90 77.8
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 3.9e-35 151.8 113 66.4
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 5.0e-35 151.4 89 77.5
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 5.0e-35 151.4 101 69.3
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 6.6e-35 151.0 89 77.5
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 6.6e-35 151.0 90 76.7
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 8.6e-35 150.6 97 69.1
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 8.6e-35 150.6 105 69.5
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.1e-34 150.2 85 81.2
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.1e-34 150.2 85 81.2
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 1.5e-34 149.8 103 68.9
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 4.3e-34 148.3 89 77.5
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.6e-33 146.4 120 63.3
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.1e-33 146.0 108 66.7
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 2.8e-33 145.6 89 76.4
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 2.8e-33 145.6 108 64.8
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 2.8e-33 145.6 85 76.5
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 6.2e-33 144.4 103 64.1
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 8.0e-33 144.1 85 76.5
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 8.0e-33 144.1 187 46.5
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.0e-32 143.7 109 63.3
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.0e-32 143.7 109 63.3
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 1.4e-32 143.3 85 75.3
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 1.4e-32 143.3 89 74.2
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 2.3e-32 142.5 84 76.2
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.3e-32 142.5 102 64.7
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 5.2e-32 141.4 84 76.2
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.1e-29 133.7 91 69.2
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 1.6e-28 129.8 108 64.8
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 2.0e-28 129.4 132 51.5
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 4.6e-28 128.3 90 65.6
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 3.9e-27 125.2 98 63.3
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 1.8e-24 116.3 85 63.5
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.7e-22 108.6 110 54.5
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 3.1e-16 89.0 97 53.6
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 4.0e-16 88.6 57 78.9
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 5.2e-16 88.2 53 77.4
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 1.2e-15 87.0 54 74.1
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 1.6e-12 76.6 41 78.0
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.8e-12 74.3 49 69.4
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 3.0e-11 72.4 67 59.7
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.9e-10 69.7 70 54.3
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 1.9e-10 69.7 73 46.6
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 7.3e-10 67.8 43 69.8
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.6e-09 66.6 64 50.0
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 1.6e-09 66.6 64 50.0
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 2.8e-09 65.9 55 52.7
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 1.1e-08 63.9 47 63.8
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.8e-08 63.2 44 61.4
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.2e-07 60.5 41 65.9
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 5.8e-07 58.2 42 61.9


User provided reference genes

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