Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.2e-136 487.3 248 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 4.5e-45 185.7 213 45.1
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.3e-44 184.1 213 42.7
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 8.7e-41 171.4 226 39.4
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.1e-35 154.5 204 40.7
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.4e-30 137.5 193 38.9
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 2.4e-30 136.7 202 35.6
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 3.4e-29 132.9 215 34.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.7e-28 130.6 198 35.4
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 2.2e-28 130.2 210 36.2
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 2.2e-28 130.2 233 33.0
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 6.5e-28 128.6 194 35.1
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 8.4e-28 128.3 202 34.7
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 8.4e-28 128.3 194 36.1
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.4e-27 127.5 194 36.1
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 1.9e-27 127.1 231 33.8
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.9e-27 127.1 200 34.0
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.9e-27 127.1 215 32.6
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 2.5e-27 126.7 194 33.5
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 2.5e-27 126.7 217 33.2
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 3.2e-27 126.3 204 34.3
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 3.2e-27 126.3 204 34.3
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 3.2e-27 126.3 197 35.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 9.3e-27 124.8 202 33.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 9.3e-27 124.8 194 34.5
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 2.1e-26 123.6 194 34.0
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 2.1e-26 123.6 214 33.6
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 2.7e-26 123.2 194 33.0
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.7e-26 123.2 223 33.2
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 2.7e-26 123.2 194 33.5
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 4.6e-26 122.5 226 31.9
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 4.6e-26 122.5 193 34.7
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 4.6e-26 122.5 207 32.4
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 4.6e-26 122.5 194 33.5
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 6.1e-26 122.1 195 34.4
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 6.1e-26 122.1 195 34.4
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 6.1e-26 122.1 194 33.5
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 7.9e-26 121.7 215 31.6
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 7.9e-26 121.7 214 33.6
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 7.9e-26 121.7 213 33.8
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.3e-25 120.9 199 33.2
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 1.8e-25 120.6 194 33.5
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 2.3e-25 120.2 204 32.4
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 3.0e-25 119.8 195 33.8
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 3.0e-25 119.8 195 33.8
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 3.9e-25 119.4 195 33.8
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 3.9e-25 119.4 222 30.6
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.9e-25 119.4 204 31.9
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 5.1e-25 119.0 198 31.8
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 5.1e-25 119.0 194 34.0
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 6.7e-25 118.6 197 33.0
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 1.1e-24 117.9 194 32.0
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.1e-24 117.9 194 33.0
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.1e-24 117.9 210 29.0
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.5e-24 117.5 206 33.0
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.5e-24 116.7 205 31.7
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 2.5e-24 116.7 205 31.7
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 3.3e-24 116.3 194 33.5
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 4.3e-24 115.9 194 32.5
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 4.3e-24 115.9 215 30.2
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 4.3e-24 115.9 213 29.6
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 4.3e-24 115.9 194 34.0
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.7e-24 115.5 201 31.8
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 5.7e-24 115.5 204 30.9
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 5.7e-24 115.5 211 29.9
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 5.7e-24 115.5 205 31.2
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 7.4e-24 115.2 219 31.1
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.3e-23 114.4 203 31.5
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.3e-23 114.4 194 32.0
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.6e-23 114.0 197 33.5
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.6e-23 114.0 211 30.3
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.2e-23 113.6 204 32.8
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 2.8e-23 113.2 200 32.5
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.8e-23 113.2 208 31.7
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 3.7e-23 112.8 186 32.3
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 4.8e-23 112.5 198 31.8
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 8.2e-23 111.7 204 32.4
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 1.1e-22 111.3 202 31.7
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.8e-22 110.5 196 33.2
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.8e-22 110.5 204 32.4
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.8e-22 110.5 196 33.7
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 4.1e-22 109.4 222 30.6
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.1e-22 109.4 229 28.8
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 1.5e-21 107.5 218 28.4
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.5e-21 107.5 204 30.4
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 2.0e-21 107.1 218 28.4
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 7.7e-21 105.1 204 28.9
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 2.2e-20 103.6 206 32.0
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 3.8e-20 102.8 222 27.5
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 8.5e-20 101.7 183 32.2
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.1e-19 101.3 194 28.9
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 4.2e-19 99.4 141 33.3
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.2e-18 97.8 165 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 7.9e-18 95.1 214 32.2
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 2.3e-17 93.6 186 33.9
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 8.8e-17 91.7 146 30.8
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.1e-16 91.3 146 30.8
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.5e-16 90.9 215 27.4
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.7e-15 87.4 227 31.7
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 5.3e-14 82.4 143 31.5
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.5e-13 79.3 112 34.8
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 2.9e-12 76.6 190 28.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 5.0e-12 75.9 158 29.7
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.1e-11 74.7 96 34.4
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 1.1e-11 74.7 216 28.2
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.6e-10 70.9 95 33.7
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 6.1e-10 68.9 204 24.5
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 7.9e-10 68.6 91 36.3
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.3e-09 67.0 165 27.9
Glyma.17G050600 Glycine max HOM05D003252 ORTHO05D003640 3.0e-09 66.6 191 29.3
GSVIVG01015103001 Vitis vinifera HOM05D003252 ORTHO05D003640 3.0e-09 66.6 191 26.7
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 5.1e-09 65.9 184 27.7
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 1.1e-08 64.7 204 25.0
Aqoxy7G04119 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.0e-08 63.9 210 25.7
TWI63G0970 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 2.0e-08 63.9 195 26.2
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 3.3e-08 63.2 189 28.6
Mapoly0050s0059 Marchantia polymorpha HOM05D003252 ORTHO05D003640 5.7e-08 62.4 218 29.4
C03p89840 Brassica napus HOM05D003252 ORTHO05D003640 7.4e-08 62.0 177 24.3
VMungo1215G3032 Vigna mungo HOM05D003252 ORTHO05D003640 1.3e-07 61.2 189 27.5
Thhalv10011777m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 2.2e-07 60.5 182 24.7
CANSAT46G0006 Cannabis sativa HOM05D003252 ORTHO05D003640 2.8e-07 60.1 190 29.5
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.7e-07 59.7 195 25.6
TAR636G0880 Trochodendron aralioides HOM05D003252 ORTHO05D003640 3.7e-07 59.7 217 24.4
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 4.8e-07 59.3 124 29.0
Glyma.15G176100 Glycine max HOM05D003252 ORTHO05D003640 1.4e-06 57.8 191 27.7
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.8e-06 57.4 113 32.7
QL05p040193 Quercus lobata HOM05D003252 ORTHO05D003640 3.1e-06 56.6 196 25.0
Pp3s121_30 Physcomitrium patens HOM05D006617 ORTHO05D315255 4.1e-06 56.2 33 81.8


User provided reference genes

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