Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 8.8e-131 470.3 242 100.0
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.5e-45 187.2 242 45.9
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 7.4e-37 158.3 234 42.7
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.7e-36 157.1 234 42.7
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 4.8e-36 155.6 244 37.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.8e-36 155.6 226 42.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 8.2e-36 154.8 243 37.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.1e-35 154.5 239 39.7
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.1e-35 154.5 235 40.0
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.4e-35 154.1 238 40.8
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-35 153.7 233 39.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.8e-35 153.7 223 42.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.8e-35 153.7 230 40.4
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.4e-35 153.3 230 38.7
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 2.4e-35 153.3 225 42.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 3.1e-35 152.9 242 38.4
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.1e-35 152.9 230 40.4
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 4.1e-35 152.5 225 41.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.1e-35 152.5 223 43.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.3e-35 152.1 242 38.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 5.3e-35 152.1 258 40.7
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 5.3e-35 152.1 230 38.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.3e-35 152.1 233 39.1
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.0e-35 151.8 235 39.1
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 9.1e-35 151.4 222 43.2
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 9.1e-35 151.4 237 37.6
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.0e-34 150.2 234 42.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 2.6e-34 149.8 221 42.5
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.6e-34 149.8 228 39.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.5e-34 149.4 239 38.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 4.5e-34 149.1 226 42.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.5e-34 149.1 225 40.0
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.9e-34 148.7 226 42.9
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.9e-34 148.7 224 40.2
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 7.7e-34 148.3 234 40.6
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 7.7e-34 148.3 230 39.1
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 7.7e-34 148.3 238 39.5
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.0e-33 147.9 237 37.1
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.0e-33 147.9 247 39.3
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.0e-33 147.9 230 39.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.7e-33 147.1 227 41.9
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.8e-33 146.0 224 42.4
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.8e-33 146.0 229 40.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.0e-33 145.6 241 36.5
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 5.0e-33 145.6 236 39.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 6.5e-33 145.2 245 37.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 8.5e-33 144.8 273 33.7
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 8.5e-33 144.8 223 40.4
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.1e-32 144.4 234 40.2
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.1e-32 144.4 238 38.2
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.1e-32 144.4 245 37.1
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 1.1e-32 144.4 200 42.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.5e-32 144.1 250 38.4
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.5e-32 144.1 229 37.6
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.9e-32 143.7 234 39.7
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.9e-32 143.7 225 40.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.9e-32 143.7 228 40.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.9e-32 143.7 231 37.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-32 143.3 225 40.0
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.2e-32 142.9 239 39.3
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.2e-32 142.5 228 40.4
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.2e-32 142.5 228 40.4
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 4.2e-32 142.5 223 38.6
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 5.5e-32 142.1 248 37.5
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 5.5e-32 142.1 248 37.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.5e-32 142.1 227 40.1
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 5.5e-32 142.1 237 37.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 7.2e-32 141.7 236 37.3
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.2e-31 141.0 230 39.6
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-31 140.6 242 37.2
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 2.7e-31 139.8 238 37.8
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.7e-31 139.8 231 36.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.6e-31 139.4 234 38.5
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 4.7e-31 139.0 238 37.4
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 4.7e-31 139.0 244 36.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.1e-31 138.7 223 39.0
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 6.1e-31 138.7 234 38.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.1e-31 138.7 223 39.9
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.1e-31 138.7 235 37.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 8.0e-31 138.3 231 37.2
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 8.0e-31 138.3 223 37.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.0e-30 137.9 236 39.4
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.0e-30 137.9 240 36.7
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.0e-30 137.9 249 36.5
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.0e-30 137.9 225 40.0
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.4e-30 137.5 238 37.0
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.4e-30 137.5 238 37.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.4e-30 137.5 238 37.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.4e-30 137.5 230 37.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.4e-30 137.5 234 38.9
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.8e-30 137.1 242 36.4
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.3e-30 136.7 239 37.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 3.0e-30 136.3 245 35.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 5.2e-30 135.6 235 36.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.2e-30 135.6 245 35.5
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 6.7e-30 135.2 238 35.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-29 134.4 259 35.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-29 134.4 242 36.4
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-29 134.4 228 39.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.5e-29 134.0 191 41.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.0e-29 133.7 256 36.7
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 3.3e-29 132.9 218 37.6
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 4.4e-29 132.5 239 35.6
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.4e-29 132.5 216 38.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 5.7e-29 132.1 228 37.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 5.7e-29 132.1 233 37.8
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.7e-29 132.1 266 37.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.7e-29 132.1 254 35.4
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 7.5e-29 131.7 237 35.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 9.7e-29 131.3 177 41.8
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.3e-28 131.0 250 35.2
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.3e-28 131.0 228 38.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.2e-28 130.2 255 36.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 2.8e-28 129.8 233 35.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 4.8e-28 129.0 240 35.0
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.8e-28 129.0 195 41.0
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 6.3e-28 128.6 254 34.6
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.3e-28 128.6 222 36.5
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 6.3e-28 128.6 222 36.5
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.3e-28 128.6 196 39.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.1e-27 127.9 167 42.5
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.1e-27 127.9 243 35.0
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.4e-27 127.5 202 40.6
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.8e-27 127.1 228 36.0
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 5.3e-27 125.6 126 48.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.9e-26 122.1 130 49.2
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.2e-25 120.2 251 35.1
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 6.1e-23 112.1 221 36.2
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.4e-22 110.9 190 36.3
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.8e-22 110.5 183 41.5
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.0e-22 109.8 148 43.2
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.6e-21 106.7 128 43.8
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 2.2e-20 103.6 169 40.8
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.4e-19 100.1 125 42.4
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.8e-14 82.0 154 35.1
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.6e-13 80.1 119 42.0
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.7e-13 79.0 75 48.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.3e-12 77.8 132 37.1
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-12 77.8 138 35.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.2e-12 77.0 252 29.4
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-11 74.3 138 35.5
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 3.1e-11 73.2 137 35.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 7.0e-11 72.0 195 32.8
CBR_g53680 Chara braunii HOM05D004631 ORTHO05D005223 1.0e-09 68.2 67 56.7
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.7e-09 67.4 117 33.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.7e-09 67.4 117 33.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.7e-09 67.4 117 33.3
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.7e-09 67.4 168 30.4
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 6.1e-07 58.9 152 34.9
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.0e-06 58.2 175 29.7
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 8.9e-06 55.1 186 31.2


User provided reference genes

Program Settings