Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.2e-47 192.6 85 100.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.3e-33 145.2 80 77.5
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.3e-25 118.6 83 65.1
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.1e-25 117.5 81 64.2
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 8.7e-25 116.7 79 67.1
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.1e-24 116.3 84 65.5
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-24 116.3 80 63.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.1e-24 116.3 82 65.9
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.5e-24 115.9 82 65.9
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.5e-24 115.9 81 63.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.5e-24 115.9 81 63.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.9e-24 115.5 83 67.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.9e-24 115.5 82 65.9
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.5e-24 115.2 80 62.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.5e-24 115.2 80 62.5
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.5e-24 115.2 83 62.7
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.5e-24 115.2 85 65.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.5e-24 115.2 84 63.1
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 3.3e-24 114.8 83 62.7
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 4.3e-24 114.4 81 64.2
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 4.3e-24 114.4 81 64.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.3e-24 114.4 80 61.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 4.3e-24 114.4 83 62.7
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 5.6e-24 114.0 82 64.6
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 5.6e-24 114.0 84 63.1
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 5.6e-24 114.0 80 66.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 7.4e-24 113.6 83 65.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 7.4e-24 113.6 79 65.8
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 7.4e-24 113.6 80 62.5
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 9.6e-24 113.2 84 63.1
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 9.6e-24 113.2 82 64.6
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.6e-24 113.2 85 64.7
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.3e-23 112.8 80 67.5
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.3e-23 112.8 84 60.7
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.6e-23 112.5 82 61.0
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.6e-23 112.5 82 61.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.6e-23 112.5 82 63.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.6e-23 112.5 82 62.2
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.6e-23 112.5 82 63.4
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.6e-23 112.5 84 61.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.6e-23 112.5 84 61.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.6e-23 112.5 84 61.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 2.1e-23 112.1 79 62.0
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.8e-23 111.7 83 62.7
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 3.7e-23 111.3 82 62.2
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 3.7e-23 111.3 83 63.9
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.7e-23 111.3 84 59.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.7e-23 111.3 80 63.8
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 4.8e-23 110.9 83 62.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.8e-23 110.9 87 59.8
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 6.2e-23 110.5 82 62.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 6.2e-23 110.5 68 69.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.2e-23 110.5 85 62.4
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 6.2e-23 110.5 83 61.4
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.2e-23 110.2 83 59.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.1e-22 109.8 84 60.7
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.1e-22 109.8 79 64.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.4e-22 109.4 84 57.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.4e-22 109.4 84 57.1
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.4e-22 109.4 81 63.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.4e-22 109.4 79 63.3
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.4e-22 109.4 79 62.0
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.4e-22 109.4 83 59.0
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.8e-22 109.0 68 67.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-22 109.0 68 67.6
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 62.5
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.8e-22 109.0 68 67.6
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 57.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 57.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.8e-22 109.0 82 58.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 58.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 58.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 58.8
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 2.4e-22 108.6 68 67.6
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.4e-22 108.6 82 62.2
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.4e-22 108.6 80 63.8
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.4e-22 108.6 80 63.8
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.4e-22 108.6 84 58.3
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.4e-22 108.6 80 60.0
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 3.1e-22 108.2 86 60.5
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 3.1e-22 108.2 81 60.5
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 4.0e-22 107.8 82 59.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 5.3e-22 107.5 82 61.0
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.3e-22 107.5 84 57.1
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 5.3e-22 107.5 83 57.8
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 5.3e-22 107.5 79 59.5
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 6.9e-22 107.1 71 63.4
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 6.9e-22 107.1 87 56.3
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 9.0e-22 106.7 82 62.2
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 9.0e-22 106.7 81 61.7
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 9.0e-22 106.7 81 63.0
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 9.0e-22 106.7 83 57.8
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.5e-21 105.9 68 66.2
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.5e-21 105.9 79 57.0
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 1.5e-21 105.9 78 62.8
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 2.0e-21 105.5 79 58.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.0e-21 105.5 80 62.5
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 2.6e-21 105.1 80 60.0
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 3.4e-21 104.8 83 59.0
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 3.4e-21 104.8 81 60.5
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 4.5e-21 104.4 68 63.2
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 7.6e-21 103.6 68 63.2
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.7e-20 102.4 78 60.3
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 4.9e-20 100.9 80 61.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 6.5e-20 100.5 80 61.2
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 6.5e-20 100.5 79 59.5
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 6.5e-20 100.5 68 63.2
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.1e-19 99.8 60 71.7
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.4e-19 99.4 83 59.0
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.9e-19 99.0 59 71.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.9e-19 99.0 82 59.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 7.1e-19 97.1 93 52.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 9.3e-19 96.7 68 61.8
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.3e-17 92.8 61 60.7
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.6e-15 85.9 62 54.8
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 9.0e-14 80.1 151 33.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 5.9e-13 77.4 68 48.5
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.1e-11 73.2 62 56.5
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.4e-11 72.8 59 61.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.5e-11 72.0 52 59.6
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.5e-11 72.0 51 62.7
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.2e-11 71.6 61 57.4
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 4.2e-11 71.2 61 54.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.2e-11 71.2 60 56.7
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.2e-11 71.2 66 54.5
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.2e-10 69.7 57 56.1
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-10 69.7 57 56.1
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-10 69.7 57 56.1
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.1e-10 68.9 55 58.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.1e-10 68.9 63 50.8
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.1e-10 68.9 60 58.3
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.7e-10 68.6 60 55.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 3.6e-10 68.2 62 51.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 3.6e-10 68.2 64 54.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.6e-10 67.8 58 53.4
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-09 66.6 43 65.1
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.4e-09 66.2 60 53.3
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.8e-09 65.9 57 56.1
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 2.3e-09 65.5 45 62.2
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.3e-09 65.5 45 62.2
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 2.3e-09 65.5 45 62.2
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.0e-09 65.1 50 60.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 6.7e-09 63.9 45 60.0
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.7e-08 60.1 61 50.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-07 58.9 38 65.8


User provided reference genes

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