Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 2.6e-62 241.9 123 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 9.0e-23 110.5 124 51.6
Pp3c6_21020 Physcomitrium patens HOM05D003540 ORTHO05D004012 2.0e-22 109.4 74 71.6
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.3e-21 106.7 107 54.2
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 5.0e-21 104.8 104 52.9
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 3.2e-20 102.1 103 51.5
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 3.2e-20 102.1 103 53.4
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 4.2e-20 101.7 104 51.9
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 5.5e-20 101.3 110 48.2
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 9.3e-20 100.5 111 47.7
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 1.2e-19 100.1 110 49.1
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.2e-19 100.1 104 50.0
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.2e-19 100.1 103 52.4
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.6e-19 99.8 104 49.0
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 1.6e-19 99.8 103 50.5
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 1.6e-19 99.8 103 51.5
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 2.1e-19 99.4 104 50.0
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.1e-19 99.4 103 49.5
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 2.7e-19 99.0 104 51.0
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 3.6e-19 98.6 103 49.5
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 3.6e-19 98.6 103 49.5
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 3.6e-19 98.6 103 49.5
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 3.6e-19 98.6 104 50.0
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 4.6e-19 98.2 103 51.5
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 4.6e-19 98.2 104 51.0
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 6.1e-19 97.8 104 50.0
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 7.9e-19 97.4 104 49.0
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 7.9e-19 97.4 104 48.1
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 7.9e-19 97.4 104 48.1
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.0e-18 97.1 106 47.2
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.4e-18 96.7 104 49.0
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.8e-18 96.3 104 48.1
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 1.8e-18 96.3 103 49.5
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.8e-18 96.3 110 47.3
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 1.8e-18 96.3 109 48.6
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 3.0e-18 95.5 117 46.2
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 3.0e-18 95.5 104 47.1
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 3.9e-18 95.1 114 48.2
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 5.1e-18 94.7 103 48.5
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 5.1e-18 94.7 103 48.5
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 5.1e-18 94.7 114 45.6
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 5.1e-18 94.7 104 51.0
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 6.7e-18 94.4 104 48.1
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 6.7e-18 94.4 104 48.1
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 8.8e-18 94.0 113 45.1
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 8.8e-18 94.0 113 45.1
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 8.8e-18 94.0 103 49.5
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.1e-17 93.6 101 49.5
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.1e-17 93.6 101 49.5
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 1.1e-17 93.6 102 48.0
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 1.5e-17 93.2 102 48.0
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.5e-17 93.2 96 51.0
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.9e-17 92.8 110 46.4
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 1.9e-17 92.8 109 47.7
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.5e-17 92.4 104 46.2
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 3.3e-17 92.0 104 47.1
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 3.3e-17 92.0 103 45.6
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 3.3e-17 92.0 109 45.9
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 3.3e-17 92.0 102 48.0
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 4.3e-17 91.7 104 45.2
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 4.3e-17 91.7 101 49.5
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 4.3e-17 91.7 109 47.7
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 5.7e-17 91.3 104 45.2
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 5.7e-17 91.3 103 45.6
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 5.7e-17 91.3 102 47.1
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 5.7e-17 91.3 103 48.5
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 5.7e-17 91.3 110 45.5
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 7.4e-17 90.9 102 47.1
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 7.4e-17 90.9 104 45.2
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.3e-16 90.1 102 46.1
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.3e-16 90.1 104 43.3
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 1.3e-16 90.1 103 46.6
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.3e-16 90.1 103 44.7
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.7e-16 89.7 104 45.2
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 1.7e-16 89.7 102 47.1
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 1.7e-16 89.7 104 46.2
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 1.7e-16 89.7 104 47.1
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.2e-16 89.4 104 47.1
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.2e-16 89.4 104 44.2
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.2e-16 89.4 104 44.2
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 2.2e-16 89.4 103 47.6
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 2.8e-16 89.0 103 45.6
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 2.8e-16 89.0 104 45.2
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 2.8e-16 89.0 103 48.5
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 3.7e-16 88.6 103 52.4
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 3.7e-16 88.6 102 45.1
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 3.7e-16 88.6 103 44.7
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 6.3e-16 87.8 103 46.6
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 6.3e-16 87.8 103 42.7
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 6.3e-16 87.8 104 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 8.2e-16 87.4 89 57.3
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 8.2e-16 87.4 103 43.7
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 8.2e-16 87.4 104 44.2
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 8.2e-16 87.4 104 43.3
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.1e-15 87.0 103 43.7
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 1.1e-15 87.0 101 46.5
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 1.1e-15 87.0 103 44.7
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 1.4e-15 86.7 104 43.3
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 1.4e-15 86.7 102 43.1
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.8e-15 86.3 101 48.5
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 1.8e-15 86.3 104 48.1
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.1e-15 85.5 104 45.2
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 3.1e-15 85.5 104 45.2
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 4.1e-15 85.1 104 44.2
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 4.1e-15 85.1 103 43.7
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 4.1e-15 85.1 104 44.2
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 4.1e-15 85.1 101 48.5
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 4.1e-15 85.1 101 48.5
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 5.3e-15 84.7 104 45.2
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 5.3e-15 84.7 103 43.7
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 6.9e-15 84.3 103 42.7
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 1.2e-14 83.6 103 41.7
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.5e-14 83.2 103 40.8
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 1.5e-14 83.2 102 41.2
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 1.5e-14 83.2 100 44.0
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.0e-14 82.8 101 47.5
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 2.0e-14 82.8 103 39.8
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.0e-14 82.8 104 42.3
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 2.6e-14 82.4 90 46.7
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 3.4e-14 82.0 104 43.3
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 3.4e-14 82.0 103 39.8
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 4.5e-14 81.6 82 50.0
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 4.5e-14 81.6 103 39.8
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 5.9e-14 81.3 103 39.8
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 5.9e-14 81.3 103 39.8
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 7.7e-14 80.9 82 50.0
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 1.3e-13 80.1 103 38.8
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.7e-13 79.7 103 39.8
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 2.2e-13 79.3 103 39.8
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 2.2e-13 79.3 103 38.8
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 2.2e-13 79.3 78 55.1
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 5.0e-13 78.2 103 38.8
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 5.0e-13 78.2 103 38.8
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 6.5e-13 77.8 103 37.9
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 6.5e-13 77.8 103 37.9
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 6.5e-13 77.8 103 38.8
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 8.5e-13 77.4 82 50.0
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.4e-12 76.6 103 38.8
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.4e-12 76.6 98 41.8
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.9e-12 76.3 103 38.8
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 3.2e-12 75.5 75 50.7
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.2e-12 75.5 86 46.5
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.2e-12 75.5 86 46.5
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 5.5e-12 74.7 121 40.5
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 3.6e-11 72.0 88 42.0
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 1.0e-10 70.5 104 39.4
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 1.5e-09 66.6 90 40.0
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 1.5e-09 66.6 90 40.0
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 2.6e-09 65.9 77 44.2
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 2.6e-09 65.9 78 47.4
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 4.4e-09 65.1 77 44.2
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 4.4e-09 65.1 104 39.4
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 5.7e-09 64.7 104 39.4
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 5.7e-09 64.7 109 40.4
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 2.2e-08 62.8 73 46.6
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 4.1e-07 58.5 115 33.0
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 7.0e-07 57.8 51 52.9
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 1.2e-06 57.0 53 52.8
MCO11G826 Micromonas commoda HOM05D003540 ORTHO05D004012 1.2e-06 57.0 104 33.7
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.2e-06 57.0 52 55.8
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.2e-06 57.0 50 54.0
Cre09.g405600 Chlamydomonas reinhardtii HOM05D003540 ORTHO05D004012 2.0e-06 56.2 104 32.7
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 2.6e-06 55.8 62 43.5
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 3.4e-06 55.5 51 56.9
Actinidia33112 Actinidia chinensis HOM05D003540 ORTHO05D004012 5.9e-06 54.7 75 40.0
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 7.7e-06 54.3 51 51.0


User provided reference genes

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