Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9890 Physcomitrium patens HOM05D001804 ORTHO05D312166 1.8e-23 111.7 56 100.0
Pp3c6_9870 Physcomitrium patens HOM05D001804 ORTHO05D001970 1.0e-21 105.9 52 100.0
Zm00001eb269520 Zea mays HOM05D001804 ORTHO05D001970 4.4e-09 63.9 54 53.7
Zm00001eb378430 Zea mays HOM05D001804 ORTHO05D001970 4.4e-09 63.9 54 53.7
Os06g0129400 Oryza sativa ssp. japonica HOM05D001804 ORTHO05D001970 9.8e-09 62.8 54 51.9
BcaC09g51038 Brassica carinata HOM05D001804 ORTHO05D001970 1.7e-08 62.0 54 50.0
A01p14300 Brassica napus HOM05D001804 ORTHO05D001970 1.7e-08 62.0 54 50.0
C01p17610 Brassica napus HOM05D001804 ORTHO05D001970 1.7e-08 62.0 54 50.0
BolC1t01699H Brassica oleracea HOM05D001804 ORTHO05D001970 1.7e-08 62.0 54 50.0
BraA01t01376Z Brassica rapa HOM05D001804 ORTHO05D001970 1.7e-08 62.0 54 50.0
Mapoly0094s0020 Marchantia polymorpha HOM05D001804 ORTHO05D001970 1.7e-08 62.0 52 59.6
Thhalv10024565m.g Eutrema salsugineum HOM05D001804 ORTHO05D001970 4.9e-08 60.5 54 48.1
Sp7g21080 Schrenkiella parvula HOM05D001804 ORTHO05D001970 6.4e-08 60.1 54 48.1
SMO139G0067 Selaginella moellendorffii HOM05D001804 ORTHO05D001970 6.4e-08 60.1 52 53.8
Hund11531 Selenicereus undatus HOM05D001804 ORTHO05D001970 8.3e-08 59.7 54 46.3
BcaB01g01680 Brassica carinata HOM05D001804 ORTHO05D001970 1.1e-07 59.3 54 46.3
CARHR254500 Cardamine hirsuta HOM05D001804 ORTHO05D001970 1.1e-07 59.3 54 46.3
FAN08G1826 Fragaria x ananassa HOM05D001804 ORTHO05D001970 1.1e-07 59.3 52 48.1
DCAR_005675 Daucus carota HOM05D001804 ORTHO05D001970 1.4e-07 58.9 54 46.3
BcaNung01004 Brassica carinata HOM05D001804 ORTHO05D001970 1.9e-07 58.5 54 46.3
ATR0757G014 Amborella trichopoda HOM05D001804 ORTHO05D001970 2.4e-07 58.2 54 48.1
MD04G1068900 Malus domestica HOM05D001804 ORTHO05D001970 3.2e-07 57.8 54 46.3
Prupe.5G089200 Prunus persica HOM05D001804 ORTHO05D001970 3.2e-07 57.8 54 44.4
QL12p016855 Quercus lobata HOM05D001804 ORTHO05D001970 4.1e-07 57.4 54 46.3
Aqoxy5G04103 Aquilegia oxysepala HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 46.3
A09p27300 Brassica napus HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 44.4
C09p34620 Brassica napus HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 44.4
BolC9t56308H Brassica oleracea HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 44.4
BraA09t38296Z Brassica rapa HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 44.4
FvH4_5g01390 Fragaria vesca HOM05D001804 ORTHO05D001970 5.4e-07 57.0 52 46.2
FAN04G2830 Fragaria x ananassa HOM05D001804 ORTHO05D001970 5.4e-07 57.0 52 46.2
FAN13G2436 Fragaria x ananassa HOM05D001804 ORTHO05D001970 5.4e-07 57.0 52 46.2
FAN18G3200 Fragaria x ananassa HOM05D001804 ORTHO05D001970 5.4e-07 57.0 52 46.2
Sp6g05640 Schrenkiella parvula HOM05D001804 ORTHO05D001970 5.4e-07 57.0 54 44.4
CSS0013248 Camellia sinensis var. sinensis HOM05D001804 ORTHO05D001970 7.0e-07 56.6 54 44.4
Carub.0006s3092 Capsella rubella HOM05D001804 ORTHO05D001970 7.0e-07 56.6 54 46.3
AUR62010664 Chenopodium quinoa HOM05D001804 ORTHO05D001970 7.0e-07 56.6 54 44.4
AUR62017305 Chenopodium quinoa HOM05D001804 ORTHO05D001970 7.0e-07 56.6 54 44.4
Thhalv10029436m.g Eutrema salsugineum HOM05D001804 ORTHO05D001970 7.0e-07 56.6 54 44.4
Aa31LG9G10620 Aethionema arabicum HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 46.3
AL6G46520 Arabidopsis lyrata HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
AT4G11810 Arabidopsis thaliana HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
Carub.0007s1828 Capsella rubella HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
PSO478G0440 Papaver somniferum HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 48.1
PSO782G2834 Papaver somniferum HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 48.1
SalBow6G2137 Salvia bowleyana HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
Solyc08g080200.4 Solanum lycopersicum HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
Sopen08g028560 Solanum pennellii HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
PGSC0003DMG402022752 Solanum tuberosum HOM05D001804 ORTHO05D001970 9.2e-07 56.2 54 44.4
Actinidia14508 Actinidia chinensis HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 44.4
AL7G30530 Arabidopsis lyrata HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 44.4
AT4G22990 Arabidopsis thaliana HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 44.4
Dinv39019 Davidia involucrata HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 42.6
Manes.02G031100 Manihot esculenta HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 44.4
Nn1g01322 Nelumbo nucifera HOM05D001804 ORTHO05D001970 1.2e-06 55.8 54 44.4
RcHm_v2.0_Chr7g0199491 Rosa chinensis HOM05D001804 ORTHO05D001970 1.2e-06 55.8 52 46.2
CAN.G981.47 Capsicum annuum HOM05D001804 ORTHO05D001970 1.6e-06 55.5 54 42.6
Manes.01G068400 Manihot esculenta HOM05D001804 ORTHO05D001970 1.6e-06 55.5 54 42.6
PSO063G1018 Papaver somniferum HOM05D001804 ORTHO05D001970 1.6e-06 55.5 54 46.3
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 1.6e-06 55.5 54 42.6
TWI81G0964 Tripterygium wilfordii HOM05D001804 ORTHO05D001970 1.6e-06 55.5 54 42.6
Cpa.g.sc18.180 Carica papaya HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 42.6
Ciclev10019105m.g Citrus clementina HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 42.6
Gohir.D12G227400 Gossypium hirsutum HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 42.6
Gorai.008G243400 Gossypium raimondii HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 42.6
Nn6g34289 Nelumbo nucifera HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 44.4
PSO782G1120 Papaver somniferum HOM05D001804 ORTHO05D001970 2.1e-06 55.1 54 44.4
COL.COLO4_05281 Corchorus olitorius HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
CsaV3_5G003300 Cucumis sativus L. HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
Duzib138G1392 Durio zibethinus HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 44.4
Lsat_1_v5_gn_3_5980 Lactuca sativa HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 44.4
Lsat_1_v5_gn_6_12921 Lactuca sativa HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
Potri.003G120600 Populus trichocarpa HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
PGR042G2530 Punica granatum HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 44.4
Sabra01G0084900 Salix brachista HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
Sabra03G0084700 Salix brachista HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
Sed0003395 Sechium edule HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 42.6
HPP92_008384 Vanilla planifolia HOM05D001804 ORTHO05D001970 2.7e-06 54.7 54 46.3
HPP92_008389 Vanilla planifolia HOM05D001804 ORTHO05D019410 2.7e-06 54.7 54 46.3
CARHR230050 Cardamine hirsuta HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 42.6
Ca_12099_v3 Cicer arietinum L. HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 40.7
Migut.E01149 Erythranthe guttata HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 42.6
Glyma.10G229900 Glycine max HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 40.7
Glyma.20G163400 Glycine max HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 40.7
Peaxi162Scf00620g00827 Petunia axillaris HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 40.7
Sed0015697 Sechium edule HOM05D001804 ORTHO05D001970 3.5e-06 54.3 54 42.6
Actinidia02052 Actinidia chinensis HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 42.6
Aa31LG6G5040 Aethionema arabicum HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 44.4
MELO3C005624.2 Cucumis melo HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 42.6
Gohir.A12G224600 Gossypium hirsutum HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 42.6
Lalb_Chr06g0161381 Lupinus albus HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 40.7
Medtr6g053510 Medicago truncatula HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 40.7
QL12p016890 Quercus lobata HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 42.6
SGA_v2.0_scaffold196G40895 Striga asiatica HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 40.7
THA.LOC104806365 Tarenaya hassleriana HOM05D001804 ORTHO05D001970 4.6e-06 53.9 54 42.6
CiPaw.12G099300 Carya illinoinensis HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
ClCG01G003190 Citrullus lanatus HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 42.6
DCAR_008427 Daucus carota HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Duzib068G1157 Durio zibethinus HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Eucgr.E00526 Eucalyptus grandis HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 44.4
Glyma.09G128500 Glycine max HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Glyma.16G176100 Glycine max HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Hma1.2p1_0371F.1_g138210 Hydrangea macrophylla HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Psat1g107640 Pisum sativum HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
Psat1g107960 Pisum sativum HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
SGA_v2.0_scaffold286G47107 Striga asiatica HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 38.9
Thecc.01G369900 Theobroma cacao HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 42.6
TPR.G9166 Trifolium pratense HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 40.7
GSVIVG01019870001 Vitis vinifera HOM05D001804 ORTHO05D001970 6.0e-06 53.5 54 42.6
BcaB07g31377 Brassica carinata HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 44.4
BcaC06g31929 Brassica carinata HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 44.4
A09p13340 Brassica napus HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 44.4
BraA09t36983Z Brassica rapa HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 44.4
CANSAT56G0021 Cannabis sativa HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 44.4
CDE12G0787 Ceratophyllum demersum HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 46.3
COL.COLO4_12636 Corchorus olitorius HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
Gohir.A12G103300 Gossypium hirsutum HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
Gohir.D12G106700 Gossypium hirsutum HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
Gorai.008G115900 Gossypium raimondii HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
Lj8C239T10 Lonicera japonica HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 40.7
Oeu001899.1 Olea europaea HOM05D001804 ORTHO05D001970 7.8e-06 53.1 52 42.3
Potri.001G111400 Populus trichocarpa HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
Hund16964 Selenicereus undatus HOM05D001804 ORTHO05D001970 7.8e-06 53.1 52 46.2
Sc07g0009510 Simmondsia chinensis HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 38.9
TAR375G0372 Trochodendron aralioides HOM05D001804 ORTHO05D001970 7.8e-06 53.1 54 42.6
TAR629G2591 Trochodendron aralioides HOM05D001804 ORTHO05D001970 7.8e-06 53.1 52 44.2


User provided reference genes

Program Settings