Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.4e-84 316.2 164 100.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.7e-80 301.6 164 92.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 2.0e-49 199.5 154 64.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.4e-47 193.4 148 64.9
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.0e-42 175.6 150 60.0
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.0e-33 146.4 139 54.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 8.3e-32 141.0 153 50.3
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.1e-31 140.6 149 49.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-31 140.6 149 49.7
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 51.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 51.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 51.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 51.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 51.0
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.4e-31 139.4 149 51.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 4.1e-31 138.7 149 50.3
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 7.0e-31 137.9 149 49.7
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 9.2e-31 137.5 149 50.3
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.6e-30 136.7 149 48.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 2.1e-30 136.3 149 49.0
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.1e-30 136.3 149 49.7
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.7e-30 136.0 153 49.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.5e-30 135.6 149 49.7
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 4.6e-30 135.2 149 49.7
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.6e-30 135.2 149 48.3
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 6.0e-30 134.8 149 49.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.0e-30 134.8 149 49.7
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 48.3
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 49.7
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.7
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.3e-29 133.7 149 49.0
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-29 133.7 149 47.7
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.7e-29 133.3 149 49.0
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 2.3e-29 132.9 149 49.0
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 3.0e-29 132.5 149 48.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.9e-29 132.1 149 48.3
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 5.0e-29 131.7 149 48.3
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 8.6e-29 131.0 149 48.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 8.6e-29 131.0 149 48.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 8.6e-29 131.0 149 47.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.1e-28 130.6 149 48.3
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.1e-28 130.6 149 47.7
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.1e-28 130.6 149 48.3
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.1e-28 130.6 149 46.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.5e-28 130.2 149 47.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.5e-28 130.2 149 47.7
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.5e-28 130.2 149 47.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.5e-28 130.2 149 46.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.5e-28 130.2 149 48.3
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.9e-28 129.8 149 47.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.9e-28 129.8 149 45.6
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 2.5e-28 129.4 149 47.0
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 2.5e-28 129.4 149 46.3
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.5e-28 129.4 149 46.3
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.5e-28 129.4 148 45.9
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.5e-28 129.4 148 45.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.3e-28 129.0 149 47.7
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 3.3e-28 129.0 149 48.3
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.3e-28 129.0 149 46.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 47.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 46.3
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 47.7
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 47.7
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 47.7
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 4.3e-28 128.6 149 47.7
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 7.3e-28 127.9 149 47.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 9.5e-28 127.5 151 45.7
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.6e-27 126.7 149 47.0
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.6e-27 126.7 149 47.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.6e-27 126.7 149 46.3
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.6e-27 126.7 145 49.0
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.6e-27 126.7 149 45.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 2.1e-27 126.3 149 47.7
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.1e-27 126.3 145 49.0
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.6e-27 125.6 149 45.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.6e-27 125.6 149 45.6
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.6e-27 125.6 149 45.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.6e-27 125.6 151 43.0
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 4.7e-27 125.2 149 45.6
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 8.1e-27 124.4 145 48.3
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.1e-27 124.4 143 48.3
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.1e-26 124.0 149 45.0
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-26 123.2 132 49.2
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.3e-26 122.9 149 45.0
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 2.3e-26 122.9 149 43.0
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.0e-26 122.1 149 44.3
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 5.2e-26 121.7 149 44.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 6.8e-26 121.3 149 46.3
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.8e-26 121.3 146 45.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.2e-25 120.6 149 43.6
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.4e-25 119.0 149 45.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 4.4e-25 118.6 153 43.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 4.4e-25 118.6 153 43.1
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 5.8e-25 118.2 145 46.2
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 7.5e-25 117.9 149 43.6
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 9.9e-25 117.5 148 45.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.3e-24 117.1 153 42.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.3e-24 117.1 148 44.6
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.7e-24 116.7 149 41.6
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.2e-24 116.3 149 43.0
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.2e-24 116.3 149 43.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 4.9e-24 115.2 145 44.8
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.9e-24 115.2 149 42.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.4e-23 112.8 135 47.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.2e-23 112.5 149 41.6
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 4.1e-23 112.1 149 41.6
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.2e-22 110.5 149 40.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.6e-22 110.2 132 44.7
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 4.6e-22 108.6 125 48.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.7e-21 106.7 139 43.2
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.3e-21 106.3 150 44.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.9e-20 103.2 198 35.9
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 9.5e-20 100.9 123 47.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-19 100.5 138 41.3
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.8e-19 99.4 110 50.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 3.1e-18 95.9 139 41.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.2e-17 94.0 116 41.4
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.2e-17 94.0 127 43.3
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.0e-17 93.2 113 47.8
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 3.4e-17 92.4 145 40.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.4e-17 92.0 204 31.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 2.2e-16 89.7 112 40.2
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.8e-16 89.0 89 51.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.8e-16 89.0 139 39.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-15 85.5 82 52.4
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.0e-13 79.3 77 51.9
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 6.6e-13 78.2 91 45.1
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.1e-12 77.4 122 37.7
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.3e-12 74.7 66 54.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.6e-11 72.4 67 52.2
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.6e-11 72.4 67 52.2
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-11 72.0 66 51.5
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-10 70.9 65 52.3
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 5.2e-10 68.6 102 43.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 6.9e-10 68.2 134 33.6
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-09 67.4 135 35.6
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-09 67.0 65 49.2
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 5.8e-09 65.1 47 66.0
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.9e-07 60.1 76 48.7


User provided reference genes

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